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dgomezpere / msm_tfm

Development of an application to visualize, annotate and prioritize somatic variants in cancer
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[docker] Restructure scripts and additional config files to allocate in separate dirs #8

Closed dgomezpere closed 2 years ago

dgomezpere commented 2 years ago

Current structure of the repo:

.
├── bioinfo_installers
│   ├── install_bcftools.sh
│   ├── install_htslib.sh
│   ├── install_vcf_validator.sh
│   ├── install_vep.sh
│   └── install_vt.sh
├── cpan.MyConfig.pm
├── debconf_preseed.conf
├── Dockerfile
├── install_bioconductor.R
├── install_IRkernel.R
├── py_requirements.txt
└── scripts
    └── start_jupyterlab.sh

Wanted new structure of the repo

.
├── bioinfo_installers
│   ├── install_bcftools.sh
│   ├── install_htslib.sh
│   ├── install_vcf_validator.sh
│   ├── install_vep.sh
│   └── install_vt.sh
├── config
│   ├── cpan.MyConfig.pm
│   ├── debconf_preseed.conf
│   └── py_requirements.txt
├── Dockerfile
└── scripts
    ├── install_bioconductor.R
    ├── install_IRkernel.R
    └── start_jupyterlab.sh