The average pseudo-temporal expression profile of genes within individual modules of the SOM

dgrun / FateID

R package for the inference of cell fate bias from single-cell RNA-seq data.

22 stars 8 forks source link

The average pseudo-temporal expression profile of genes within individual modules of the SOM #4

Open TuoCai2000 opened 8 months ago

TuoCai2000 commented 8 months ago

Hi, thank you for developing FateID! I ran the code as the reference manual provided with default parameters. But when I plot the average pseudo-temporal expression profile of genes within individual modules of the SOM, I noticed some variances in my plot. How can I optimize my parameters? Thank you so much!!!

dgrun commented 8 months ago

The output of this function depends on the architecture, and will not be exactly the same on every platform.