projcells using sc instead of object@sc

dgrun / StemID

Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.

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projcells using sc instead of object@sc #2

Closed tjnitram closed 7 years ago

tjnitram commented 7 years ago

There are two instances where sc is used instead of object@sc in projcells line 889: pdil <- sc@tsne[f,] line 894: cn <- as.data.frame(pdi[compmedoids(sc@fdata[,names(lp)],lp),])

dgrun commented 7 years ago

Thanks a lot for letting me know. I fixed the bug. If you had run RaceID2 before in the same workspace, the bug should not have affected the results.