Adding additional cell identifier

dgrun / StemID

Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.

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Adding additional cell identifier #5

Closed skim245 closed 4 years ago

skim245 commented 4 years ago

Hi I'm new to RaceID2/StemID

and have a question if I can add additional cell identifier to SCseq object.

such as sample IDs and replicate IDs. are there anyways to store meta.data of the object?

Thank you in advance!

dgrun commented 4 years ago

Hi,

StemID/RaceID does not allow to store additional meta.data yet. I normally integrate these data into the cell IDs, i.e. column name. But this is something I should add in the future versions....

I would also highly recommend using RaceID3/StemID2, which is available as R package from CRAN or from the https://github.com/dgrun/RaceID3_StemID2_package repository.