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dhbrookes / aav_clean

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FileNotFoundError: [Errno 2] No such file or directory: '../data/counts/library_name_pre_counts.csv #2

Open qicheng-ma opened 1 month ago

qicheng-ma commented 1 month ago

Dear Dr. Brookes

But, when I try to run "python ../src/keras_models_run.py library_name ann ", I got error message:

FileNotFoundError: [Errno 2] No such file or directory: '../data/counts/library_name_pre_counts.csv'

Because the github does not provide us with the data:

kggx609@usplscpn004[us]/projects/rd/users/kggx609/software/aav_clean$ find . -name "library_name_pre_counts.csv" -print kggx609@usplscpn004[us]/projects/rd/users/kggx609/software/aav_clean$

Could you show me the toy data in library_name_pre_counts.csv so that I could understand the format of file library_name_pre_counts.csv ?

Thanks,

apbusia commented 1 month ago

The demo data files included in the code release are the small "toy" example read files in data/raw/. This section provides the instructions for pre-processing these files to produce the counts files for these demo data prior to modeling. After following those instructions, you will be able to run the modeling script on the (processed) demo data by providing demo as the library_name argument in the command. I hope that you find this helpful.