This pull request includes the following updates and changes:
Conda Environment Update:
The environment.yml file has been upgraded to include updated packages due to availability issues. You can review the changes in the following commit:ae04e74.
Updated Packages:
Minor Changes in process.ipynb:
Small adjustments were made in the process.ipynb notebook to align with the newer version of Networkx. These changes can be seen in the following lines:
Line 390:
graph.node[go_id][key].add(gene)\n changed to graph.nodes[go_id][key].add(gene)\n
Lines 404 and 409 were similarly adjusted.
The specific commit for these changes can be reviewed here.
refs https://github.com/dhimmel/gene-ontology/issues/6
This pull request includes the following updates and changes:
environment.yml
file has been upgraded to include updated packages due to availability issues. You can review the changes in the following commit:ae04e74. Updated Packages:You can view the relevant lines here.
process.ipynb
: Small adjustments were made in the process.ipynb notebook to align with the newer version of Networkx. These changes can be seen in the following lines:Line 390:
graph.node[go_id][key].add(gene)\n
changed tograph.nodes[go_id][key].add(gene)\n
Lines 404 and 409 were similarly adjusted. The specific commit for these changes can be reviewed here.