Save as an obo file - Githubissues

dhimmel / obonet

OBO-formatted ontologies → networkx (Python 3)

https://github.com/dhimmel/obonet/blob/main/examples/go-obonet.ipynb

Other

136 stars 28 forks source link

Save as an obo file #17

Closed MahboobehJannesari closed 4 years ago

MahboobehJannesari commented 4 years ago

Hi,

I would like is it possible to save a graph as obo file using obonet? I load an obo file and change some part pf graph, I want to save it as a new obo file.

best Mahboubeh

dhimmel commented 4 years ago

obonet does not support writing to .obo files, only reading into a networkx graph.

Some other projects that might allow you to write obo are:

https://github.com/fastobo/fastobo-py
https://github.com/althonos/pronto

I will close this issue because I think writing .obo is out of scope for this repository. But please do update if either of these solutions work for you, in case others find that helpful.