Open hyosilpro opened 3 years ago
Sounds like there is a cycle in the graph. The 2021-02-13 Uberon must not directed acyclic for the union of the is_a, part_of, develops_from relations.
What if you remove develops_from
from in_keys
?
I did remove develops_from from in_keys, but same error has occured.
so, I download human subset.
following link data set http://uberon.github.io/downloads.html#subsets
https://raw.githubusercontent.com/obophenotype/uberon/master/subsets/human-view.obo
And then the problem was solved.
Ah, nice to see that Uberon now has a human view. This wasn't around when we made human-constraint.ipynb
, such that you probably don't need human-constraint.ipynb
at all anymore. Since now you can just use human-view.obo
as the input ontology for process.ipynb
.
Ah, nice to see that Uberon now has a human view. This wasn't around when we made
human-constraint.ipynb
, such that you probably don't needhuman-constraint.ipynb
at all anymore. Since now you can just usehuman-view.obo
as the input ontology forprocess.ipynb
.
When I checked the code, it was determined that as you mentioned. just start ' process.ipynb` . Thank you very much for your reply.
An error occurred in the module below. I used the current version uberon 2021.02.13. But when I used the old version you provided 2015-07-24 Uberon release, there is no error.
The error message is:
The error message was as follows, and I tried several things, but it didn't work. What should I do?
Kindly regards