how to convert .cool、.h5、.hic、.mcool file to .matrix.txt file ? - Githubissues

dhkron / PSYCHIC

Code for finding putative enhancers using Hi-C data

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how to convert .cool、.h5、.hic、.mcool file to .matrix.txt file ? #16

Closed shaoxiong2588 closed 3 months ago

shaoxiong2588 commented 3 months ago

how to convert .cool、.h5、.hic、.mcool file to .matrix.txt file ?

yuvlyg commented 3 months ago

it seems like cooler can dump .cool files to .txt matrices, but I haven't tried myself https://cooler.readthedocs.io/en/stable/cli.html#cooler-dump please re-open the issue if you're still having problems