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dhmay / param-medic

Param-Medic breathes new life into MS/MS database searches by optimizing parameter settings to your data.
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TypeError: unhashable type: 'list' #2

Open edeutsch opened 5 years ago

edeutsch commented 5 years ago

Hi, I have installed Param-medic and it works great on most of the example mzML files at: https://noble.gs.washington.edu/proj/param-medic/ I get what appears to be good output for 9 of the 11 mzML files.

But I get an error on 140915_SKBR3B-TMT_SAX_FT.mzML

python --version Python 2.7.16

/proteomics/sw/python/param-medic/bin/param-medic 140915_SKBR3B-TMT_SAX_FT.mzML 2019-08-20 21:05:07,510 INFO: Processing input file 140915_SKBR3B-TMT_SAX_FT.mzML... 2019-08-20 21:05:11,388 INFO: processed 0 total spectra in 3.9 seconds... Traceback (most recent call last): File "/proteomics/sw/python/param-medic/bin/param-medic", line 377, in main() File "/proteomics/sw/python/param-medic/bin/param-medic", line 234, in main run_attribute_detector.process_spectrum(spectrum, binned_spectrum) File "build/bdist.linux-x86_64/egg/parammedic/errorcalc.py", line 156, in process_spectrum File "build/bdist.linux-x86_64/egg/parammedic/errorcalc.py", line 514, in process_spectrum TypeError: unhashable type: 'list'

dhmay commented 5 years ago

Like Issue #3, this is an issue with the mzML version of the file but not the .ms2. However, param-medic shouldn't be throwing that error. I'll have a look.