fail to install CONISmat - Githubissues

diazlab / CONICS

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

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fail to install CONISmat #14

Closed RitataLU closed 4 years ago

RitataLU commented 4 years ago

Hi When I run this step "devtools::install_github("diazlab/CONICS/CONICSmat", dep = FALSE)" I got the following error message

ERROR: dependencies ‘beanplot’, ‘mixtools’, ‘pheatmap’, ‘squash’, ‘scran’ are not available for package ‘CONICSmat’

removing ‘/diskmnt/Projects/Users/ritalu/miniconda3/lib/R/library/CONICSmat’ Error: Failed to install 'CONICSmat' from GitHub: (converted from warning) installation of package ‘/tmp/RtmpuHb2D4/file4515252505c5/CONICSmat_0.0.0.1.tar.gz’ had non-zero exit status

soerenmueller commented 4 years ago

Hi,

please run:

install.packages("beanplot") install.packages("mixtools") install.packages("pheatmap") install.packages("squash")

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("scran")

prior to installing CONCISmat.