How can we use RPKM or TPM values for prediction of CNVs or tumour cells?

diazlab / CONICS

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

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How can we use RPKM or TPM values for prediction of CNVs or tumour cells? #24

Open avln24 opened 4 years ago

avln24 commented 4 years ago

Hello @diazlab and @soerenmueller

I want to apply CONICSmat to a gene expression matrix of rpkm values and a matrix of tpm values. How should I go about converting rpkm or tpm to log2(cpm/10+1) values so that I may apply CONICSmat?

Thank you