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dib-lab / 2020-ibd

Analysis of publicly available metagenomic sequencing data from humans with IBD.
BSD 3-Clause "New" or "Revised" License
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record eggnog database download command #18

Open taylorreiter opened 4 years ago

taylorreiter commented 4 years ago 
~/miniconda3/envs/eggnog/bin/download_eggnog_data.py -yf --data_dir ../../eggnog_db

runs:

Downloading "eggnog.db" at /home/tereiter/github/2020-ibd/sandbox/test_megahit_diginorm_nocat/eggnog_db...
cd /home/tereiter/github/2020-ibd/sandbox/test_megahit_diginorm_nocat/eggnog_db && wget -nH --user-agent=Mozilla/5.0 --relative --no-parent --reject "index.html*" --cut-dirs=4 -e robots=off -O eggnog.db.gz http://eggnogdb.embl.de/download/emapperdb-5.0.0/eggnog.db.gz && echo Decompressing... && gunzip eggnog.db.gz -f
--2020-07-03 15:05:47--  http://eggnogdb.embl.de/download/emapperdb-5.0.0/eggnog.db.gz
Resolving eggnogdb.embl.de (eggnogdb.embl.de)... 194.94.44.170
Connecting to eggnogdb.embl.de (eggnogdb.embl.de)|194.94.44.170|:80... connected.
HTTP request sent, awaiting response... 302 Moved Temporarily
Location: http://eggnog5.embl.de/download/emapperdb-5.0.0/eggnog.db.gz [following]
--2020-07-03 15:05:48--  http://eggnog5.embl.de/download/emapperdb-5.0.0/eggnog.db.gz
Resolving eggnog5.embl.de (eggnog5.embl.de)... 194.94.44.170
Reusing existing connection to eggnogdb.embl.de:80.
HTTP request sent, awaiting response... 200 OK
Length: 8446706749 (7.9G) [application/octet-stream]
Saving to: ‘eggnog.db.gz’