The way it's currently written, the charcoal rule in the snakefile needs to be run with -j 1. Charcoal is written to run on all genomes of interest at the same time, but I wrote the rule to run on each separately; this was to get around a wildcard issue. Should be fixed to generalize.
taylorreiter
commented
3 years ago
The way it's currently written, the charcoal rule in the snakefile needs to be run with
-j 1. Charcoal is written to run on all genomes of interest at the same time, but I wrote the rule to run on each separately; this was to get around a wildcard issue. Should be fixed to generalize.