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dib-lab
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2020-ibd
Analysis of publicly available metagenomic sequencing data from humans with IBD.
BSD 3-Clause "New" or "Revised" License
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overhaul pipeline
#4
Closed
taylorreiter
closed
4 years ago
taylorreiter
commented
4 years ago
fixes metadata issue where seq libraries with multiple SRA identifiers were treated as separate samples
fixes metadata issue where one study was dropped from analysis
removes time series samples
changes model to leave-on-out validation starting at vita variable selection
adds 3 sourmash gather commands -- refseq, genbank, and all db