what is our estimate of the number of total k-mers in genbank?

dib-lab / 2020-paper-sourmash-gather

Here we describe an extension of MinHash that permits accurate compositional analysis of metagenomes with low memory and disk requirements.

https://dib-lab.github.io/2020-paper-sourmash-gather

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what is our estimate of the number of total k-mers in genbank? #30

Open ctb opened 3 years ago

luizirber commented 3 years ago

I can work on this, I need it to validate the cardinality estimation of the original dataset using scaled minhash (and the cardinality estimation is necessary for the new containment equation discussed in the theory section #13)