Figure 1 commentary and updates

dib-lab / 2020-paper-sourmash-gather

Here we describe an extension of MinHash that permits accurate compositional analysis of metagenomes with low memory and disk requirements.

https://dib-lab.github.io/2020-paper-sourmash-gather

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Figure 1 commentary and updates #39

Open ctb opened 2 years ago

ctb commented 2 years ago

ok, I've got the containment figure (figure 1) working with sourmash now.

The notebook is containment/notebooks/containment-plot.ipynb in the https://github.com/dib-lab/2021-paper-sourmash-gather-pipeline repo.

The figure plotted by that notebook, images/containment.svg, is also update in the paper.

@taylorreiter thoughts welcome :)

taylorreiter commented 2 years ago

woo! I think the font is still too small, and a cord_flip() (ggplot term...not sure what the synonymous python term is) might help with the wasted space, but otherwise it looks great