Add VDJ / B- & T-cell receptor sequencing

dib-lab / 2020-workflows-paper

Strategies for leveraging workflow systems to streamline large-scale biological analyses

https://dib-lab.github.io/2020-workflows-paper

Other

6 stars 8 forks source link

Add VDJ / B- & T-cell receptor sequencing #18

Open olgabot opened 4 years ago

olgabot commented 4 years ago

Another form of sequence analysis is doing immune repertoire sequencing of the VDJ recombination locus in B and T cells.

For captured/enriched bulk-rnaseq of B cells: https://immcantation.readthedocs.io/en/stable/

For single-cell RNA seq:

B cells: https://github.com/Teichlab/bracer
T cells: https://github.com/Teichlab/tracer

taylorreiter commented 4 years ago

Hi @olgabot! @bluegenes and I just finished reworking the paper to place more emphasis on workflows/workflow systems. Do you think this suggestion still fits? Where do you think it fits best?

olgabot commented 4 years ago

Thanks for the update! I'll read the latest version and give you my thoughts. Thanks for the reminder!

olgabot commented 4 years ago

Does it make sense to wait until https://github.com/bluegenes/2020-gep/pull/23 is in before giving comments?

bluegenes commented 4 years ago

@olgabot #23 is now merged and the paper has been moved over to the dib-lab organization. New manuscript html link: https://dib-lab.github.io/2020-workflows-paper