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dib-lab
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2022-sra-gather
Classify all the metagenomes. ALL THE METAGENOMES. (Eventually.)
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license?
#13
taylorreiter
closed
1 year ago
1
papers that have cool analyses that we might be able to do with gather profiles
#12
taylorreiter
opened
2 years ago
0
thoughts about leveraging database covers for biology
#11
taylorreiter
opened
2 years ago
0
back-generating count data that will be compatible for diversity/richness estimates from gather profiles
#10
taylorreiter
closed
2 years ago
3
potential metadata resources to improve data labelling
#9
taylorreiter
opened
2 years ago
1
computational prediction/separation of 16s vs shotgun metagenomic data
#8
taylorreiter
opened
2 years ago
0
use ihmp paired mgx mtx data to see if clustering can pull out paired samples
#7
taylorreiter
opened
2 years ago
0
providing querying etc via SQL database
#6
ctb
opened
2 years ago
0
use cases and comparisons with other search approaches
#5
ctb
opened
2 years ago
0
[MRG] analysis workbooks for SRA gather results
#4
taylorreiter
opened
2 years ago
1
ScientificNames that made sense for me to include in a random forests analysis
#3
taylorreiter
opened
2 years ago
0
analysis idea: re-cluster the SRA based on taxonomy profiles or on jaccard similarity to de novo produce "biomes" that inherit labels from majority in cluster
#2
taylorreiter
opened
2 years ago
1
analysis idea: are there any data that look mis-labelled?
#1
taylorreiter
opened
2 years ago
2