dib-lab / charcoal

Remove contaminated contigs from genomes using k-mers and taxonomies.
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Add tests for system conf `scaled` and `gather_scaled` values to match the default database scaled? #219

Open taylorreiter opened 2 years ago

taylorreiter commented 2 years ago

Although I'm not totally sure how to do this, because the scaled values have to match the gather db scaled, and the gather db is large-ish to download. If we could download it in the tests, we could just check if the scaled values match with system conf, but not sure if this file/download time is too long, esp for a github actions workflow.

See #218 and #217