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dib-lab / charcoal

Remove contaminated contigs from genomes using k-mers and taxonomies.
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[MRG] add matplotlib to report env #223

Closed taylorreiter closed 2 years ago

taylorreiter commented 2 years ago

addresses #213

the demo still fails with #222, but happens at a later point in the snakemake DAG.

@ctb @bluegenes ready for review and merge once tests pass.