BUSCO dependency error - Githubissues

dib-lab / dammit

just annotate it, dammit!

http://dib-lab.github.io/dammit/

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BUSCO dependency error #114

Open camillescott opened 6 years ago

camillescott commented 6 years ago

From some systems during DIBSI 2018:

TaskFailed - taskid:busco:trinity.nema.fasta-metazoa_odb9
busco:trinity.nema.fasta-metazoa_odb9 <stderr>:
Traceback (most recent call last):
 File "/home/dibtiger/miniconda3/envs/py3.dammit/bin/run_BUSCO.py", line 26, in <module>
   from pipebricks.PipeLogger import PipeLogger
ModuleNotFoundError: No module named 'pipebricks'

Appears to be an issue with BUSCO.

johnsolk commented 5 years ago

A work-around is setting up and using a conda env. See #118.