When I running dammit, the error about databases is coming for "BUSCO not found'. I downloaded all the databases and check it files exsited in path ~/home/user/.dammit/databases/busco2db.
command line shows:
# dammit
## a tool for easy de novo transcriptome annotation
by Camille Scott
**v1.0.rc0**, 2018
## submodule: annotate
### Database Check
#### Info
* Database Directory: /home/wj/.dammit/databases/
* Doit Database: /home/wj/.dammit/databases/databases.doit.db
*All database tasks up-to-date.*
Traceback (most recent call last):
File "/home/wj/py3/bin/dammit", line 9, in <module>
sys.exit(app.DammitApp(arg_src=sys.argv[1:]).run())
File "/home/wj/py3/lib/python3.5/site-packages/dammit/app.py", line 44, in run
return self.args.func()
File "/home/wj/py3/lib/python3.5/site-packages/dammit/app.py", line 305, in handle_annotate
db_handler.files)
File "/home/wj/py3/lib/python3.5/site-packages/dammit/annotate.py", line 121, in build_default_pipeline
register_busco_task(handler, config, databases)
File "/home/wj/py3/lib/python3.5/site-packages/dammit/annotate.py", line 211, in register_busco_task
params=config['busco']['params'])
File "/home/wj/py3/lib/python3.5/site-packages/dammit/utils.py", line 89, in d_to_t
task_dict = task_dict_func(*args, **kwargs)
File "/home/wj/py3/lib/python3.5/site-packages/dammit/profile.py", line 163, in func
task = task_func(*args, **kwargs)
File "/home/wj/py3/lib/python3.5/site-packages/dammit/tasks/busco.py", line 60, in task
exc = self.deps()
File "/home/wj/py3/lib/python3.5/site-packages/dammit/tasks/busco.py", line 29, in deps
raise InstallationError('BUSCO not found. NOTE: '\
dammit.tasks.utils.InstallationError: BUSCO not found. NOTE: dammit 1.0 requires BUSCO v2 or greater
When I running dammit, the error about databases is coming for "BUSCO not found'. I downloaded all the databases and check it files exsited in path ~/home/user/.dammit/databases/busco2db.
command line shows: