Open bluegenes opened 5 years ago
see dib-lab/eelpond/issues/17
dammit databases --install --database-dir /home/titus/eelpond/databases --busco-group metazoa --n_threads 4
Installing... #### Run Tasks - [ ] download:Pfam-A.hmm.gz: * Cmd: `curl -o Pfam-A.hmm.gz ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam28.0/Pfam-A.hmm.gz` * Python: function check_hash - [ ] hmmpress:Pfam-A.hmm: * Cmd: `/home/titus/eelpond/.snakemake/conda/8b49a15e/bin/hmmpress /home/titus/eelpond/databases/Pfam-A.hmm` TaskFailed - taskid:hmmpress:Pfam-A.hmm Command failed: '/home/titus/eelpond/.snakemake/conda/8b49a15e/bin/hmmpress /home/titus/eelpond/databases/Pfam-A.hmm' returned 1 - [ ] download:Rfam.cm.gz: * Cmd: `curl -o Rfam.cm.gz ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.1/Rfam.cm.gz` * Python: function check_hash - [ ] download:aa_seq_euk.fasta.gz: * Cmd: `curl -o aa_seq_euk.fasta.gz ftp://cegg.unige.ch/OrthoDB8/Eukaryotes/FASTA/aa_seq_euk.fasta.gz` * Python: function check_hash - [ ] cmpress:Rfam.cm: * Cmd: `/home/titus/eelpond/.snakemake/conda/8b49a15e/bin/cmpress /home/titus/eelpond/databases/Rfam.cm` - [ ] lastdb:aa_seq_euk.fasta: * Cmd: `/home/titus/eelpond/.snakemake/conda/8b49a15e/bin/lastdb -p -w3 /home/titus/eelpond/databases/aa_seq_euk.fasta /home/titus/eelpond/databases/aa_seq_euk.fasta` TaskFailed - taskid:cmpress:Rfam.cm Command failed: '/home/titus/eelpond/.snakemake/conda/8b49a15e/bin/cmpress /home/titus/eelpond/databases/Rfam.cm' returned 1 TaskFailed - taskid:lastdb:aa_seq_euk.fasta Command failed: '/home/titus/eelpond/.snakemake/conda/8b49a15e/bin/lastdb -p -w3 /home/titus/eelpond/databases/aa_seq_euk.fasta /home/titus/eelpond/databases/aa_seq_euk.fasta' returned 1
works fine as: dammit databases --install --database-dir /home/titus/eelpond/databases --busco-group metazoa
dammit databases --install --database-dir /home/titus/eelpond/databases --busco-group metazoa
What an odd failure mode... I'll look into it.
see dib-lab/eelpond/issues/17
dammit databases --install --database-dir /home/titus/eelpond/databases --busco-group metazoa --n_threads 4
works fine as:
dammit databases --install --database-dir /home/titus/eelpond/databases --busco-group metazoa