I have a problem with the dammit pipeline at the beginning. Thanks for the help you can give me.
-David
Here is my code:
dammit annotate Trinity.fasta
This is the error message that I received:
dammit
a tool for easy de novo transcriptome annotation
by Camille Scott
v1.0rc2, 2018
Traceback (most recent call last):
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/bin/dammit", line 9, in
sys.exit(app.DammitApp(arg_src=sys.argv[1:]).run())
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/site-packages/dammit/app.py", line 45, in run
return self.args.func()
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/site-packages/dammit/app.py", line 289, in handle_annotate
log.start_logging()
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/site-packages/dammit/log.py", line 39, in run
logging.basicConfig(level=logging.DEBUG, **config)
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/logging/init.py", line 1808, in basicConfig
h = FileHandler(filename, mode)
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/logging/init.py", line 1032, in init
StreamHandler.init(self, self._open())
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/logging/init.py", line 1061, in _open
return open(self.baseFilename, self.mode, encoding=self.encoding)
OSError: [Errno 30] Read-only file system: '/home/jgarcia/dquispe/.dammit/log/dammit-all.log'
Hello,
I have a problem with the dammit pipeline at the beginning. Thanks for the help you can give me.
-David
Here is my code: dammit annotate Trinity.fasta
This is the error message that I received:
dammit
a tool for easy de novo transcriptome annotation
by Camille Scott v1.0rc2, 2018 Traceback (most recent call last): File "/home/jgarcia/dquispe/miniconda3/envs/dammit/bin/dammit", line 9, in
sys.exit(app.DammitApp(arg_src=sys.argv[1:]).run())
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/site-packages/dammit/app.py", line 45, in run
return self.args.func()
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/site-packages/dammit/app.py", line 289, in handle_annotate
log.start_logging()
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/site-packages/dammit/log.py", line 39, in run
logging.basicConfig(level=logging.DEBUG, **config)
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/logging/init.py", line 1808, in basicConfig
h = FileHandler(filename, mode)
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/logging/init.py", line 1032, in init
StreamHandler.init(self, self._open())
File "/home/jgarcia/dquispe/miniconda3/envs/dammit/lib/python3.6/logging/init.py", line 1061, in _open
return open(self.baseFilename, self.mode, encoding=self.encoding)
OSError: [Errno 30] Read-only file system: '/home/jgarcia/dquispe/.dammit/log/dammit-all.log'