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dib-lab / dammit

just annotate it, dammit!
http://dib-lab.github.io/dammit/
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lastdb:uniref90 #154

Open AEG4 opened 4 years ago

AEG4 commented 4 years ago

I apologize if this is a very basic question but I'm trying to annotate our transcriptome and am getting this error:

Out-of-date tasks:

I've tried to re-download uniref90, which puts the database in a different directory than the original so I run out of space. I've also linked the original uniref90.fasta to my dammit/databases directory but no luck. Is it possibly just an issue with files being in different folders? A collaborator installed everything and I'm trying to sort through (just learning) the paths, etc on the server. I'm using a virtual environment with python3.5.

Thanks for any thoughts.

lmuenter commented 4 years ago

Obviously nowhere near the author of this brilliant tool, but I think you just need to construct a lastdb-database of uniref90. You could just emulate what dammit databases --install does:

lastdb -p -w3 "/path/to/uniref90.fasta" "uniref90"