dib-lab / dammit

just annotate it, dammit!
http://dib-lab.github.io/dammit/
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script killed at fasta-annotate step #160

Closed DrPintoThe2nd closed 3 months ago

DrPintoThe2nd commented 4 years ago

Hi Camille!

In a sick twist of fate, I've finally gotten dammit to work (mostly) in a conda virtual environment. However, I am now receiving this error [I think] at the very end. I can't seem to track down the issue, but it shouldn't be RAM or drive space related... have you seen this before?

System info: UBUNTU 16.04, 48 threads, and 128 Gb RAM, in a conda environment. Problem persists no matter how many threads are assigned, upon restarting from scratch, and across datasets.

Also, this error doesn't occur when annotating the test dataset.

" * Python: function get_shmlast_gff3_task.cmd

I may just do a manual work around, but I thought I'd check in. Thanks again! Best, bjp