Open blasks opened 4 years ago
Same problem for me, though I am using python 3.7
Sorry for missing this issue originally. dammit v1.x is not compatible with MacOS due to issues with pinned dependencies. v2 will likely work on MacOS, but the compatibility is a work in progress.
Hi Camille! I'm having the same issue with v1.2, but on Linux. Same installation procedure.
I also received this error on linux, but only when I tried to specify an output directory for the database. If I let it download the databases to the default path, no error occurs.
I've had a number of troubles getting dammit installed and working on my MacOS environment. I have miniconda3 installed and download dammit into a new environment using the following:
With this, conda takes several minutes to solve the environment. Once everything is downloaded and installed,
which busco
returns nothing despite conda saying that it was downloaded and installed. Then when I try to rundammit databases --full --database-dir <directory/path> --busco-group protists --install
I get the following error:I checked and sqlite3 is properly installed in the environment. I've been able to run at least the non-busco steps of the pipeline previously, but now I can't even do that because of this error.