I have BUSCOv5.2.2 installed via conda and the metazoa busco database included in the database folder I point to with --database-dir. When attempting to execute the annotate step, it looks like dammit is not recognizing busco:
Traceback (most recent call last):
File "/data1/rennolds/miniconda3/bin/dammit", line 9, in <module>
sys.exit(app.DammitApp(arg_src=sys.argv[1:]).run())
File "/data1/rennolds/miniconda3/lib/python3.9/site-packages/dammit/app.py", line 45, in run
return self.args.func()
File "/data1/rennolds/miniconda3/lib/python3.9/site-packages/dammit/app.py", line 333, in handle_annotate
build_default_pipeline(annotate_handler,
File "/data1/rennolds/miniconda3/lib/python3.9/site-packages/dammit/annotate.py", line 133, in build_default_pipeline
register_busco_task(handler, config, databases)
File "/data1/rennolds/miniconda3/lib/python3.9/site-packages/dammit/annotate.py", line 245, in register_busco_task
task = BuscoTask().task(input_fn,
File "/data1/rennolds/miniconda3/lib/python3.9/site-packages/dammit/utils.py", line 89, in d_to_t
task_dict = task_dict_func(*args, **kwargs)
File "/data1/rennolds/miniconda3/lib/python3.9/site-packages/dammit/profile.py", line 163, in func
task = task_func(*args, **kwargs)
File "/data1/rennolds/miniconda3/lib/python3.9/site-packages/dammit/tasks/busco.py", line 61, in task
exc = self.deps()
File "/data1/rennolds/miniconda3/lib/python3.9/site-packages/dammit/tasks/busco.py", line 29, in deps
raise InstallationError('BUSCO not found. NOTE: '\
dammit.tasks.utils.InstallationError: BUSCO not found. NOTE: dammit 1.0 requires BUSCO v2 or greater
I definitely have Busco v2 or greater. I am using the most recent version of dammit. Any idea how to fix this?
I have BUSCOv5.2.2 installed via conda and the metazoa busco database included in the database folder I point to with --database-dir. When attempting to execute the annotate step, it looks like dammit is not recognizing busco:
I definitely have Busco v2 or greater. I am using the most recent version of dammit. Any idea how to fix this?