dib-lab / distillerycats

Find disease associations across metagenomes with k-mers using sourmash, and then recover pangenomic accessory elements using spacegraphcats.
Other
5 stars 1 forks source link

scripts reference or rely on IBD subtype or study #2

Closed taylorreiter closed 4 years ago

taylorreiter commented 4 years ago

distillerycats is a generalization of a pipeline developed to perform an metaanlysis of IBD (github.com/dib-lab/2020-ibd). The specific studies analysed and the disease subtypes being classified in the original pipeline are sometimes directly referenced in scripts and need to be generalized to apply to any study or any classification variable.

Scripts that reference IBD subtype or study in name:

Scripts that rely on IBD subtype or study:

taylorreiter commented 4 years ago

closed by #3