Don't delete trimmed reads, we need them!

[johnsolk]

In 1-quality.rst, don't rm *.fastq.gz after interleaving. We will need these later for transrate and salmon.

[ctb]

Those are the raw reads and we aren't deleting them - they are linked from ../data/, right?

-- Titus Brown, ctbrown@ucdavis.edu

On Dec 16, 2016, at 2:56 PM, Lisa Cohen notifications@github.com wrote:

In 1-quality.rst, don't rm *.fastq.gz after interleaving. We will need these later for transrate and salmon.

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[johnsolk]

Ah, ok nevermind. Trimmed reads are .qc.fq.gz in /mnt/work/quality