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dib-lab / elvers

(formerly eelpond) an automated RNA-Seq workflow system
https://dib-lab.github.io/elvers/
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[MRG] add multiqc rule #100

Closed bluegenes closed 5 years ago

bluegenes commented 5 years ago

This will close #65!

bluegenes commented 5 years ago

@charlesreid1 - dag tests are failing - any insight?

update: looks like something is going wrong with the assembly_extensions parameter. Looking into it.

Ahhh, solved. Test was very useful!

charlesreid1 commented 5 years ago

Am able to generate the following DAG with the default workflow, and verify that it contains multiqc with all the fastqc output files feeding into the multiqc step:

dag_multi

I also see green and gold when I do a dry run for the default workflow:

./run_eelpond examples/nema.yaml -n

I'm going to give this PR the rubber stamp!

ctb commented 5 years ago

mostly need to make sure it's reflected in the environment.yml I think.

bluegenes commented 5 years ago

it's already in there :)

On Tue, Mar 12, 2019 at 9:10 AM C. Titus Brown notifications@github.com wrote:

mostly need to make sure it's reflected in the environment.yml I think.

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