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dib-lab / elvers

(formerly eelpond) an automated RNA-Seq workflow system
https://dib-lab.github.io/elvers/
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unclear errors when config yaml file is badly formatted #107

Open ctb opened 5 years ago

ctb commented 5 years ago 

checking for required files:
--------

while parsing a block mapping
  in "examples/yeast.yaml", line 36, column 3
expected <block end>, but found '<block mapping start>'
  in "examples/yeast.yaml", line 37, column 5
Traceback (most recent call last):
  File "./run_eelpond", line 351, in <module>
    sys.exit(main(args))
  File "./run_eelpond", line 186, in main
    configD = import_configfile(configfile)
  File "/mnt/research/ged/ctb/eelpond/ep_utils/utils.py", line 45, in import_configfile
    configDict = read_yaml(config_file)
  File "/mnt/research/ged/ctb/eelpond/ep_utils/utils.py", line 37, in read_yaml
    return yamlD
UnboundLocalError: local variable 'yamlD' referenced before assignment```
ctb commented 5 years ago

desired behavior: "your config yaml file is messed up, yo. here's the likely problem: "