[MRG] introducing elvers! [but first, merge #99, 118, 120]

dib-lab / elvers

(formerly eelpond) an automated RNA-Seq workflow system

https://dib-lab.github.io/elvers/

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[MRG] introducing elvers! [but first, merge #99, 118, 120] #116

Closed bluegenes closed 5 years ago

bluegenes commented 5 years ago

make run_eelpond an installable pkg

ctb commented 5 years ago

yay! suggest combining this with renaming!

ctb commented 5 years ago

e.g. elvars or whatever.

bluegenes commented 5 years ago

@ctb local pytest is passing, but travis install seems to not find the examples folder. Am I missing something in the setup.py or .travis.yml?

bluegenes commented 5 years ago

Note: pure pip install is not quite working. Conda/pip hybrid installation working: build the conda env (via environment.yml), activate, then pip install the code. Will open an issue once this is merged. For now, keep using conda env install, as we require conda for the rest of elvers anyway!

bluegenes commented 5 years ago

closes #6 #9 #66