[WIP] add error checking for some commonly observed problems, plus test cases

dib-lab / elvers

(formerly eelpond) an automated RNA-Seq workflow system

https://dib-lab.github.io/elvers/

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[WIP] add error checking for some commonly observed problems, plus test cases #126

Open ctb opened 5 years ago

ctb commented 5 years ago

check for broken yaml config (no 'samples' entry) and badly formatted 'samples.tsv' (#41 is relevant).

These are common errors happening in GGG 201(b).

ctb commented 5 years ago

@bluegenes some guidance requested - what's the right test file to add the tests to? (see tests/test_files/ for the two yaml config files I want to run as part of the tests).

ctb commented 5 years ago

Looks like #116 addresses this too. Will have to see if there are automated tests checking the behavior; if there are, we can close this!

bluegenes commented 5 years ago

grabbed the examples and added tests for them in tests/test_inputs.py. Suggest closing this one!