When Deseq is in the yaml file but not a workflow option it raises an error
Found configfile at /home/prvasque/projects/shark/raw_data/shark.yaml
Traceback (most recent call last):
File "/home/prvasque/miniconda3/envs/elvers-env/bin/elvers", line 11, in <module>
load_entry_point('elvers', 'console_scripts', 'elvers')()
File "/home/prvasque/elvers/elvers/__main__.py", line 285, in main
paramsD['deseq2']['program_params']['contrasts'] = {} # get rid of default contrasts
KeyError: 'deseq2'
When Deseq is in the yaml file but not a workflow option it raises an error