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dib-lab / elvers

(formerly eelpond) an automated RNA-Seq workflow system
https://dib-lab.github.io/elvers/
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Default trimmomatic setting for Phred score cutoff? #141

Closed matthewabirk closed 5 years ago

matthewabirk commented 5 years ago

Is the default sliding window parameter on trimmomatic supposed to be 4:5 as in MacManes 2014? You cite this paper, but the default is currently set to remove when Phred score < 15.

bluegenes commented 5 years ago

thx!