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dib-lab / elvers

(formerly eelpond) an automated RNA-Seq workflow system
https://dib-lab.github.io/elvers/
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deseq2 not running as standalone #146

Closed matthewabirk closed 5 years ago

matthewabirk commented 5 years ago

When I try to run elvers my_config.yaml deseq2 after getting my salmon results, nothing is run. I've confirmed the quant.sf files are in the quant directory.

After Building DAG of jobs... the next line is Nothing to be done.

https://dib-lab.github.io/elvers/deseq2/ suggests this should be possible... any advice?