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dib-lab / elvers

(formerly eelpond) an automated RNA-Seq workflow system
https://dib-lab.github.io/elvers/
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--rerun-incomplete flag not working #147

Open matthewabirk opened 5 years ago

matthewabirk commented 5 years ago

I had to kill 9 elvers because I ran out of disk space. Now when I try to rerun, it suggests including the --rerun-incomplete flag. But when I add this, it complains that it does not recognize it.

bluegenes commented 5 years ago

--rerun-incomplete is a snakemake flag, and is not integrated into elvers. The python api equivalent seems to be force_incomplete. I've added this to #148, and it will be integrated into the main codebase with that branch.