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dib-lab / elvers

(formerly eelpond) an automated RNA-Seq workflow system
https://dib-lab.github.io/elvers/
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Can't add rules for extra target multiqc #155

Closed olar785 closed 4 years ago

olar785 commented 4 years ago

Hi there, I have just installed elvers on a CentOS linux system. It didn't work at first because apparently the latest version of snakemake is looking for a configfiles instead of a configfile. I fixed this by specifying snakemake v5.6.0. in the environment.yml file. Unfortunately, I still have an issue when running the following test command:

elvers examples/nema.yaml default

checking for required files:

Found configfile at /cluster/home/ollilaroche/Programs/elvers/examples/nema.yaml

Error: Can't add rules for extra target multiqc. Please fix.

Any idea how I might fix this issue? Thanks!

olar785 commented 4 years ago

Hi, When I tried running multiqc by itself I was receiving the following error: RuntimeError: Click will abort further execution because Python 3 was configured to use ASCII as encoding for the environment To fix this I did: export LC_ALL="en_US.UTF-8" Doing so also fixed the error message I was receiving when running the test command of elvers. All is good now.