Open ctb opened 5 years ago
Hmm. Agreed, not intended functionality.
During the refactor, I started splitting rules into include
and targets
categories to simplify the dag, as snakemake back-calculates previous targets as needed. I think this issue is an argument for going back to calculating explicit targets for all rules.
sure, let's explore reasons. want to understand whole thing before more wholesale changes, and maybe get some more tests in there!
right now if you remove the assembly directory, and then run
default
, eelpond shrugs and does nothing because all of its targets are available. this seems wrong overall.