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dib-lab / elvers

(formerly eelpond) an automated RNA-Seq workflow system
https://dib-lab.github.io/elvers/
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[WIP] newer deseq2 #97

Closed bluegenes closed 5 years ago

bluegenes commented 5 years ago

currently working on mac. to do: test on linux. Closes #94

bluegenes commented 5 years ago

@charlesreid1 maybe you could pull this into #136? I tested this on mac, but not linux - hopefully no changes required. Not sure what versions all the underlying R packages need to be, though. Thoughts?

note: the deseq2-env.yaml file now corresponds to elvers/deseq2/environment.yml

bluegenes commented 5 years ago

looks like current deseq2 version is bioconductor-deseq2=1.22.1-0

charlesreid1 commented 5 years ago

Oh cool, Github is getting smarter about detecting that a merge between branches happened. I merged these two branches on the command line, then pushed to Github, and it automatically updated this pull request as merged and closed.

:grandpa voice: back in my day, github didn't do fancy things like that, we had to walk 12 miles in the snow to merge pull requests