snakemake `--cluster-config` is deprecated. - Githubissues

dib-lab / farm-notes

notes on the farm cluster

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snakemake `--cluster-config` is deprecated. #32

Open mr-eyes opened 2 years ago

mr-eyes commented 2 years ago

Instead, snakemake has introduced --profile.

mr-eyes commented 2 years ago

A nice blog post about it:

https://fame.flinders.edu.au/blog/2021/08/02/snakemake-profiles-updated