lower run times on bml make jobs run faster. I know this is sort of an obvious statement, but reducing from 8 hours to 90 minutes was orders of magnitude speed up in how soon my jobs started actually running
-j 200 is my friend. farm can handle it and it makes things go faster
splitting charcoal conf files to handle 1/20th of gtdb at a time also had orders of magnitude speed up for dag solve time and makes no difference to me on analyzing the output results
@taylorreiter quoth:
lower run times on bml make jobs run faster. I know this is sort of an obvious statement, but reducing from 8 hours to 90 minutes was orders of magnitude speed up in how soon my jobs started actually running
-j 200 is my friend. farm can handle it and it makes things go faster
splitting charcoal conf files to handle 1/20th of gtdb at a time also had orders of magnitude speed up for dag solve time and makes no difference to me on analyzing the output results