8:58 AMtaylorreiter
this could probably go in a different channel, but is anyone else getting job submission failures?
python -m charcoal run inputs/charcoal_conf/gtdb_rs202_genomes1.conf -j 100 clean --nolock --use-conda --latency-wait 15 --rerun-incomplete -k --cluster "sbatch --time 16:00:00 -J char -p bml -n 1 -N 1 -c 1 --mem=32Gb"
sbatch: error: Batch job submission failed: Requested time limit is invalid (missing or exceeds some limit)
9:55 AMtitus:speech_balloon: yes, apparently bml has time limits now? try using bmm I guess
10:03 AMtaylorreiter Sigh
This is…sub optimal. Thx
10:17 AMbluegenes:feet: I’ve gotten these errors for quite a while with low2 or bml - usually if I’m not specifying resources and just using a default (long) runtime for a job. I haven’t thought about it systematically to figure out the actual time limits, though - did you sort that out, Taylor (or anyone)?
11:04 AMtaylorreiter decreasing the time worked — i think i did 4 hours and then they ran
:+1::skin-tone-2:
1
11:07 AMMo If you typed sinfo you will see the time limits for each partition.
:+1::+1::skin-tone-2:
3
8:58 AM taylorreiter this could probably go in a different channel, but is anyone else getting job submission failures? python -m charcoal run inputs/charcoal_conf/gtdb_rs202_genomes1.conf -j 100 clean --nolock --use-conda --latency-wait 15 --rerun-incomplete -k --cluster "sbatch --time 16:00:00 -J char -p bml -n 1 -N 1 -c 1 --mem=32Gb" sbatch: error: Batch job submission failed: Requested time limit is invalid (missing or exceeds some limit) 9:55 AM titus:speech_balloon: yes, apparently bml has time limits now? try using bmm I guess 10:03 AM taylorreiter Sigh This is…sub optimal. Thx 10:17 AM bluegenes:feet: I’ve gotten these errors for quite a while with low2 or bml - usually if I’m not specifying resources and just using a default (long) runtime for a job. I haven’t thought about it systematically to figure out the actual time limits, though - did you sort that out, Taylor (or anyone)? 11:04 AM taylorreiter decreasing the time worked — i think i did 4 hours and then they ran :+1::skin-tone-2: 1
11:07 AM Mo If you typed sinfo you will see the time limits for each partition. :+1::+1::skin-tone-2: 3
11:07 AM low/low2 and bml has 4 hours max. 12:03 PM bluegenes:feet: ah, thanks @Mo! :+1: 1