Closed mr-eyes closed 3 years ago
Below is the full backtrace of the error. kmerDecoder has no problems (The old and the current new version).
Reproduce with the following data, use chunk_size=1500
human_pc.part_001.fa.split.tar.gz
It seems like the issue is triggered from the following line:
(gdb) where full
#0 0x0000559401ce0226 in std::vector<unsigned int, std::allocator<unsigned int> >::size (this=0x80805c4c3c2c8088) at /usr/include/c++/9/bits/stl_vector.h:916
No locals.
#1 0x0000559401ce3c16 in std::vector<unsigned int, std::allocator<unsigned int> >::vector (this=0x7fffba4e3b10, __x=<error reading variable: Cannot access memory at address 0x80805c4c3c2c8090>)
at /usr/include/c++/9/bits/stl_vector.h:552
No locals.
#2 0x0000559401cd47bd in kProcessor::index (KD=0x55940461a620,
names_fileName="/home/mabuelanin/dib-dev/kmerDecoder/human_pc.fa.split/human_pc.part_001.fa.split/human_pc.part_001.part_004.fa.names", frame=0x559404615b10)
at /home/mabuelanin/dib-dev/kp_examples/indexing/lib/kProcessor/src/algorithms.cpp:1045
colors = std::vector of length 3, capacity 4 = {0, 0, 73412624}
itTag = {
ctrl_ = 0x559412de11c6 "*\200C\200\002\200#\200I\025\f\001\200\062n\200M\200\200\200\200\200_\200\023\200\060JU\200@zx{Ch}\200\t5\200\200h7\b\200\200\200\200\200\200\t\200\200\061D:\200\200\200d\200\200\003a\030\200\200\200\200L", '\200' <repeats 11 times>, "E\200#\031\200\200\200\200\200\200\200_/\200?\200\200\030\200\200u\200\017\200\034\200\004\033\ah\200\006\037;}\200\200\200\035\f\006\200[\200pf\200\200\vQ*\032\006\t\200lZ\200\200LEndq\200S\200\200\066Qcv\200\200\200\200\200\200\200\200\200u\200C\200\200\200y\200( \031\062\200\001\032\200\200\200\200g@^Yw\200\200_\200\200f\200\200\200Fm'/"..., {slot_ = 0x559412de2210}}
tmpiT = 244
colorsString = "107;205;244"
newColor = 410
currentTag = 511
itc = {ctrl_ = 0x55940466ed4f "\377", {slot_ = 0x3078695b00ff2414}}
kmer = @0x7f9d7627acf0: {str = "CTATTATTATATTCATATCTCTACACTGCAA", hash = 1146667402901346210}
__for_range = std::vector of length 5240, capacity 5270 = {{str = "AGACGGTTACCTGGCACGCTGGCCACATTCT", hash = 2254551858817553998}, {str = "GACGGTTACCTGGCACGCTGGCCACATTCTG",
hash = 1996165039621512424}, {str = "ACGGTTACCTGGCACGCTGGCCACATTCTGC", hash = 911838071752904846}, {str = "CGGTTACCTGGCACGCTGGCCACATTCTGCC", hash = 4015967930525012859}, {
str = "GGTTACCTGGCACGCTGGCCACATTCTGCCT", hash = 4272383346053997102}, {str = "GTTACCTGGCACGCTGGCCACATTCTGCCTC", hash = 2479664610794554676}, {str = "TTACCTGGCACGCTGGCCACATTCTGCCTCA",
hash = 636591433892205168}, {str = "TACCTGGCACGCTGGCCACATTCTGCCTCAC", hash = 1631231667496998417}, {str = "ACCTGGCACGCTGGCCACATTCTGCCTCACT", hash = 831152466497021057}, {
str = "CCTGGCACGCTGGCCACATTCTGCCTCACTC", hash = 1847302335668341920}, {str = "CTGGCACGCTGGCCACATTCTGCCTCACTCT", hash = 3233844935995306034}, {str = "TGGCACGCTGGCCACATTCTGCCTCACTCTT",
hash = 1168977335840258883}, {str = "GGCACGCTGGCCACATTCTGCCTCACTCTTA", hash = 3748912846293994032}, {str = "GCACGCTGGCCACATTCTGCCTCACTCTTAT", hash = 3665941082336238627}, {
str = "CACGCTGGCCACATTCTGCCTCACTCTTATC", hash = 441203803288473399}, {str = "ACGCTGGCCACATTCTGCCTCACTCTTATCA", hash = 257945315550845575}, {str = "CGCTGGCCACATTCTGCCTCACTCTTATCAG",
hash = 2891402199531825250}, {str = "GCTGGCCACATTCTGCCTCACTCTTATCAGA", hash = 316530633463993973}, {str = "CTGGCCACATTCTGCCTCACTCTTATCAGAG", hash = 1448641423490193246}, {
str = "TGGCCACATTCTGCCTCACTCTTATCAGAGT", hash = 4115330216024664760}, {str = "GGCCACATTCTGCCTCACTCTTATCAGAGTC", hash = 2434589352774224959}, {str = "GCCACATTCTGCCTCACTCTTATCAGAGTCT",
hash = 942112201614284906}, {str = "CCACATTCTGCCTCACTCTTATCAGAGTCTG", hash = 2958853833341002029}, {str = "CACATTCTGCCTCACTCTTATCAGAGTCTGA", hash = 247507700326570120}, {
str = "ACATTCTGCCTCACTCTTATCAGAGTCTGAG", hash = 2582019024410939386}, {str = "CATTCTGCCTCACTCTTATCAGAGTCTGAGC", hash = 3650312714249167636}, {str = "ATTCTGCCTCACTCTTATCAGAGTCTGAGCT",
hash = 296336788211557578}, {str = "TTCTGCCTCACTCTTATCAGAGTCTGAGCTA", hash = 1315964255860094039}, {str = "TCTGCCTCACTCTTATCAGAGTCTGAGCTAC", hash = 245686812559436375}, {
str = "CTGCCTCACTCTTATCAGAGTCTGAGCTACT", hash = 3549205002543762473}, {str = "TGCCTCACTCTTATCAGAGTCTGAGCTACTG", hash = 2444285775868316950}, {str = "GCCTCACTCTTATCAGAGTCTGAGCTACTGG",
hash = 611076699933310163}, {str = "CCTCACTCTTATCAGAGTCTGAGCTACTGGC", hash = 2808089598425270100}, {str = "CTCACTCTTATCAGAGTCTGAGCTACTGGCA", hash = 707355416505402297}, {
str = "TCACTCTTATCAGAGTCTGAGCTACTGGCAG", hash = 240511854568802354}, {str = "CACTCTTATCAGAGTCTGAGCTACTGGCAGT", hash = 1678502363967558050}, {str = "ACTCTTATCAGAGTCTGAGCTACTGGCAGTG",
hash = 1041595707067937876}, {str = "CTCTTATCAGAGTCTGAGCTACTGGCAGTGC", hash = 3119407113272679071}, {str = "TCTTATCAGAGTCTGAGCTACTGGCAGTGCT", hash = 1543754669554786414}, {
str = "CTTATCAGAGTCTGAGCTACTGGCAGTGCTT", hash = 561576121085706351}, {str = "TTATCAGAGTCTGAGCTACTGGCAGTGCTTT", hash = 3315694266711686348}, {str = "TATCAGAGTCTGAGCTACTGGCAGTGCTTTC",
hash = 828423232329585095}, {str = "ATCAGAGTCTGAGCTACTGGCAGTGCTTTCA", hash = 1287560095959574925}, {str = "TCAGAGTCTGAGCTACTGGCAGTGCTTTCAG", hash = 2089786310162126963}, {
str = "CAGAGTCTGAGCTACTGGCAGTGCTTTCAGC", hash = 3009753470430141545}, {str = "AGAGTCTGAGCTACTGGCAGTGCTTTCAGCT", hash = 2489298446322669822}, {str = "GAGTCTGAGCTACTGGCAGTGCTTTCAGCTC",
hash = 479562323485946792}, {str = "AGTCTGAGCTACTGGCAGTGCTTTCAGCTCT", hash = 674042932385701191}, {str = "GTCTGAGCTACTGGCAGTGCTTTCAGCTCTG", hash = 1322496201497159345}, {
str = "TCTGAGCTACTGGCAGTGCTTTCAGCTCTGA", hash = 3575072688005183157}, {str = "CTGAGCTACTGGCAGTGCTTTCAGCTCTGAG", hash = 3032390211470423597}, {str = "TGAGCTACTGGCAGTGCTTTCAGCTCTGAGT",
hash = 1294155751004892326}, {str = "GAGCTACTGGCAGTGCTTTCAGCTCTGAGTT", hash = 3211535873037916855}, {str = "AGCTACTGGCAGTGCTTTCAGCTCTGAGTTG", hash = 121542489420289114}, {
str = "GCTACTGGCAGTGCTTTCAGCTCTGAGTTGA", hash = 335917423857352574}, {str = "CTACTGGCAGTGCTTTCAGCTCTGAGTTGAG", hash = 3443688301786490113}, {str = "TACTGGCAGTGCTTTCAGCTCTGAGTTGAGG",
hash = 1145676817919776818}, {str = "ACTGGCAGTGCTTTCAGCTCTGAGTTGAGGC", hash = 2005725393344124583}, {str = "CTGGCAGTGCTTTCAGCTCTGAGTTGAGGCA", hash = 587306996403439853}, {
str = "TGGCAGTGCTTTCAGCTCTGAGTTGAGGCAC", hash = 4390786559099807586}, {str = "GGCAGTGCTTTCAGCTCTGAGTTGAGGCACC", hash = 445248530543031580}, {str = "GCAGTGCTTTCAGCTCTGAGTTGAGGCACCT",
hash = 2010519152598947319}, {str = "CAGTGCTTTCAGCTCTGAGTTGAGGCACCTC", hash = 4497223724559814257}, {str = "AGTGCTTTCAGCTCTGAGTTGAGGCACCTCG", hash = 2071722768031345372}, {
str = "GTGCTTTCAGCTCTGAGTTGAGGCACCTCGA", hash = 1141106766873699820}, {str = "TGCTTTCAGCTCTGAGTTGAGGCACCTCGAA", hash = 3244163357727748346}, {str = "GCTTTCAGCTCTGAGTTGAGGCACCTCGAAC",
hash = 1656122848133201861}, {str = "CTTTCAGCTCTGAGTTGAGGCACCTCGAACC", hash = 2228449759377119889}, {str = "TTTCAGCTCTGAGTTGAGGCACCTCGAACCT", hash = 2662986646517476834}, {
str = "TTCAGCTCTGAGTTGAGGCACCTCGAACCTT", hash = 1987029516908448409}, {str = "TCAGCTCTGAGTTGAGGCACCTCGAACCTTG", hash = 3827662942990249191}, {str = "CAGCTCTGAGTTGAGGCACCTCGAACCTTGT",
hash = 3809341794819965732}, {str = "AGCTCTGAGTTGAGGCACCTCGAACCTTGTT", hash = 2363478906874504245}, {str = "GCTCTGAGTTGAGGCACCTCGAACCTTGTTT", hash = 1922293509812585869}, {
str = "CTCTGAGTTGAGGCACCTCGAACCTTGTTTT", hash = 53401290648749005}, {str = "TCTGAGTTGAGGCACCTCGAACCTTGTTTTT", hash = 3205735485356737045}, {str = "CTGAGTTGAGGCACCTCGAACCTTGTTTTTG",
hash = 468888342982612373}, {str = "TGAGTTGAGGCACCTCGAACCTTGTTTTTGT", hash = 947343282128958660}, {str = "GAGTTGAGGCACCTCGAACCTTGTTTTTGTG", hash = 236844614477782314}, {
str = "AGTTGAGGCACCTCGAACCTTGTTTTTGTGG", hash = 1331535823026163987}, {str = "GTTGAGGCACCTCGAACCTTGTTTTTGTGGT", hash = 2494259516010959779}, {str = "TTGAGGCACCTCGAACCTTGTTTTTGTGGTG",
hash = 1062393378741614186}, {str = "TGAGGCACCTCGAACCTTGTTTTTGTGGTGA", hash = 170815810740753088}, {str = "GAGGCACCTCGAACCTTGTTTTTGTGGTGAA", hash = 2869577203141326574}, {
str = "AGGCACCTCGAACCTTGTTTTTGTGGTGAAG", hash = 3233781874593896978}, {str = "GGCACCTCGAACCTTGTTTTTGTGGTGAAGG", hash = 191422059116575878}, {str = "GCACCTCGAACCTTGTTTTTGTGGTGAAGGA",
hash = 3060014008806828422}, {str = "CACCTCGAACCTTGTTTTTGTGGTGAAGGAT", hash = 3053859390691900972}, {str = "ACCTCGAACCTTGTTTTTGTGGTGAAGGATC", hash = 1969474515609339547}, {
--Type <RET> for more, q to quit, c to continue without paging--
str = "CCTCGAACCTTGTTTTTGTGGTGAAGGATCC", hash = 1569715708791399399}, {str = "CTCGAACCTTGTTTTTGTGGTGAAGGATCCT", hash = 3980077008885818517}, {str = "TCGAACCTTGTTTTTGTGGTGAAGGATCCTA",
hash = 3858915067637104041}, {str = "CGAACCTTGTTTTTGTGGTGAAGGATCCTAA", hash = 1749778749645656557}, {str = "GAACCTTGTTTTTGTGGTGAAGGATCCTAAA", hash = 3318370844936342950}, {
str = "AACCTTGTTTTTGTGGTGAAGGATCCTAAAG", hash = 438733748386020317}, {str = "ACCTTGTTTTTGTGGTGAAGGATCCTAAAGT", hash = 1266695843539912779}, {str = "CCTTGTTTTTGTGGTGAAGGATCCTAAAGTG",
hash = 4488483402798802422}, {str = "CTTGTTTTTGTGGTGAAGGATCCTAAAGTGC", hash = 730172355147591281}, {str = "TTGTTTTTGTGGTGAAGGATCCTAAAGTGCT", hash = 2474376210175592629}, {
str = "TGTTTTTGTGGTGAAGGATCCTAAAGTGCTG", hash = 1505986440969705052}, {str = "GTTTTTGTGGTGAAGGATCCTAAAGTGCTGT", hash = 3342229182468857549}, {str = "TTTTTGTGGTGAAGGATCCTAAAGTGCTGTG",
hash = 3489770027088411190}, {str = "TTTTGTGGTGAAGGATCCTAAAGTGCTGTGG", hash = 2728595802550773257}, {str = "TTTGTGGTGAAGGATCCTAAAGTGCTGTGGG", hash = 1790372557164072706}, {
str = "TTGTGGTGAAGGATCCTAAAGTGCTGTGGGG", hash = 201118124230238389}, {str = "TGTGGTGAAGGATCCTAAAGTGCTGTGGGGA", hash = 2394822784416752305}, {str = "GTGGTGAAGGATCCTAAAGTGCTGTGGGGAG",
hash = 2913766816999737430}, {str = "TGGTGAAGGATCCTAAAGTGCTGTGGGGAGT", hash = 1083957273912470088}, {str = "GGTGAAGGATCCTAAAGTGCTGTGGGGAGTG", hash = 3745063112234500599}, {
str = "GTGAAGGATCCTAAAGTGCTGTGGGGAGTGA", hash = 3861413813787749834}, {str = "TGAAGGATCCTAAAGTGCTGTGGGGAGTGAT", hash = 3885518273234845771}, {str = "GAAGGATCCTAAAGTGCTGTGGGGAGTGATC",
hash = 1634305373162946385}, {str = "AAGGATCCTAAAGTGCTGTGGGGAGTGATCA", hash = 1476913983044073012}, {str = "AGGATCCTAAAGTGCTGTGGGGAGTGATCAC", hash = 1500480655010954197}, {
str = "GGATCCTAAAGTGCTGTGGGGAGTGATCACA", hash = 4006205886304171677}, {str = "GATCCTAAAGTGCTGTGGGGAGTGATCACAT", hash = 1063684948851989967}, {str = "ATCCTAAAGTGCTGTGGGGAGTGATCACATT",
hash = 401818696385865246}, {str = "TCCTAAAGTGCTGTGGGGAGTGATCACATTT", hash = 1143511543895623406}, {str = "CCTAAAGTGCTGTGGGGAGTGATCACATTTT", hash = 1330522762486075652}, {
str = "CTAAAGTGCTGTGGGGAGTGATCACATTTTT", hash = 3929957634986999729}, {str = "TAAAGTGCTGTGGGGAGTGATCACATTTTTC", hash = 2312910985735615464}, {str = "AAAGTGCTGTGGGGAGTGATCACATTTTTCA",
hash = 820186674076609}, {str = "AAGTGCTGTGGGGAGTGATCACATTTTTCAC", hash = 3370990190170701557}, {str = "AGTGCTGTGGGGAGTGATCACATTTTTCACA", hash = 1091444764667477315}, {
str = "GTGCTGTGGGGAGTGATCACATTTTTCACAA", hash = 1144025050478085607}, {str = "TGCTGTGGGGAGTGATCACATTTTTCACAAC", hash = 4193240014992342969}, {str = "GCTGTGGGGAGTGATCACATTTTTCACAACA",
hash = 4341555630426971271}, {str = "CTGTGGGGAGTGATCACATTTTTCACAACAT", hash = 1115824875535599130}, {str = "TGTGGGGAGTGATCACATTTTTCACAACATC", hash = 160538575247996201}, {
str = "GTGGGGAGTGATCACATTTTTCACAACATCC", hash = 2697010907119358398}, {str = "TGGGGAGTGATCACATTTTTCACAACATCCC", hash = 3402997797233763310}, {str = "GGGGAGTGATCACATTTTTCACAACATCCCT",
hash = 378793474996132379}, {str = "GGGAGTGATCACATTTTTCACAACATCCCTG", hash = 19230252280190883}, {str = "GGAGTGATCACATTTTTCACAACATCCCTGA", hash = 1649508160331788655}, {
str = "GAGTGATCACATTTTTCACAACATCCCTGAC", hash = 806478536352191152}, {str = "AGTGATCACATTTTTCACAACATCCCTGACT", hash = 1820404173726756025}, {str = "GTGATCACATTTTTCACAACATCCCTGACTC",
hash = 3527810998427043549}, {str = "TGATCACATTTTTCACAACATCCCTGACTCC", hash = 2075155407435972072}, {str = "GATCACATTTTTCACAACATCCCTGACTCCA", hash = 1127999080839452634}, {
str = "ATCACATTTTTCACAACATCCCTGACTCCAC", hash = 1247740405191436658}, {str = "TCACATTTTTCACAACATCCCTGACTCCACC", hash = 4496025521531630549}, {str = "CACATTTTTCACAACATCCCTGACTCCACCT",
hash = 4435943802419625410}, {str = "ACATTTTTCACAACATCCCTGACTCCACCTC", hash = 2871562830076073001}, {str = "CATTTTTCACAACATCCCTGACTCCACCTCT", hash = 2596204754767475617}, {
str = "ATTTTTCACAACATCCCTGACTCCACCTCTT", hash = 1302134788684360238}, {str = "TTTTTCACAACATCCCTGACTCCACCTCTTC", hash = 4521348037573308258}, {str = "TTTTCACAACATCCCTGACTCCACCTCTTCT",
hash = 2780220349519292211}, {str = "TTTCACAACATCCCTGACTCCACCTCTTCTG", hash = 1107921276454453298}, {str = "TTCACAACATCCCTGACTCCACCTCTTCTGC", hash = 3454457882883078983}, {
str = "TCACAACATCCCTGACTCCACCTCTTCTGCC", hash = 3017349983201059787}, {str = "CACAACATCCCTGACTCCACCTCTTCTGCCA", hash = 2876529903293581824}, {str = "ACAACATCCCTGACTCCACCTCTTCTGCCAC",
hash = 2232424657824055260}, {str = "CAACATCCCTGACTCCACCTCTTCTGCCACA", hash = 1945906454116299913}, {str = "AACATCCCTGACTCCACCTCTTCTGCCACAA", hash = 1680107508649525421}, {
str = "ACATCCCTGACTCCACCTCTTCTGCCACAAA", hash = 2074414744142747167}, {str = "CATCCCTGACTCCACCTCTTCTGCCACAAAC", hash = 658327886323735941}, {str = "ATCCCTGACTCCACCTCTTCTGCCACAAACG",
hash = 1544415177791218207}, {str = "TCCCTGACTCCACCTCTTCTGCCACAAACGT", hash = 3253088371227032224}, {str = "CCCTGACTCCACCTCTTCTGCCACAAACGTC", hash = 3064296971755776164}, {
str = "CCTGACTCCACCTCTTCTGCCACAAACGTCA", hash = 722000307740867477}, {str = "CTGACTCCACCTCTTCTGCCACAAACGTCAG", hash = 3380417266733848752}, {str = "TGACTCCACCTCTTCTGCCACAAACGTCAGC",
hash = 1024110441529798690}, {str = "GACTCCACCTCTTCTGCCACAAACGTCAGCA", hash = 863524341638087719}, {str = "ACTCCACCTCTTCTGCCACAAACGTCAGCAT", hash = 3468814548236365514}, {
str = "CTCCACCTCTTCTGCCACAAACGTCAGCATG", hash = 2508580578508573283}, {str = "TCCACCTCTTCTGCCACAAACGTCAGCATGG", hash = 1199375686733191947}, {str = "CCACCTCTTCTGCCACAAACGTCAGCATGGT",
hash = 1405549925218823208}, {str = "CACCTCTTCTGCCACAAACGTCAGCATGGTG", hash = 1381498968553634593}, {str = "ACCTCTTCTGCCACAAACGTCAGCATGGTGG", hash = 3965801941219655628}, {
str = "CCTCTTCTGCCACAAACGTCAGCATGGTGGT", hash = 2862570124473923200}, {str = "CTCTTCTGCCACAAACGTCAGCATGGTGGTA", hash = 2117806657029414218}, {str = "TCTTCTGCCACAAACGTCAGCATGGTGGTAT",
hash = 4237877294863040328}, {str = "CTTCTGCCACAAACGTCAGCATGGTGGTATC", hash = 594732706441401553}, {str = "TTCTGCCACAAACGTCAGCATGGTGGTATCA", hash = 3150617693369099126}, {
str = "TCTGCCACAAACGTCAGCATGGTGGTATCAG", hash = 224490576667288081}, {str = "CTGCCACAAACGTCAGCATGGTGGTATCAGC", hash = 4029596087638654157}, {str = "TGCCACAAACGTCAGCATGGTGGTATCAGCC",
hash = 4532072366792155982}, {str = "GCCACAAACGTCAGCATGGTGGTATCAGCCG", hash = 2046036368442275799}, {str = "CCACAAACGTCAGCATGGTGGTATCAGCCGG", hash = 3359175068922139095}, {
str = "CACAAACGTCAGCATGGTGGTATCAGCCGGC", hash = 2325649399371222295}, {str = "ACAAACGTCAGCATGGTGGTATCAGCCGGCC", hash = 2195910845236455514}, {str = "CAAACGTCAGCATGGTGGTATCAGCCGGCCA",
hash = 3890825450486026077}, {str = "AAACGTCAGCATGGTGGTATCAGCCGGCCAT", hash = 2339612393558708297}, {str = "AACGTCAGCATGGTGGTATCAGCCGGCCATT", hash = 4534107598043968953}, {
str = "ACGTCAGCATGGTGGTATCAGCCGGCCATTG", hash = 3674804131437745199}, {str = "CGTCAGCATGGTGGTATCAGCCGGCCATTGG", hash = 1258588623067523580}, {str = "GTCAGCATGGTGGTATCAGCCGGCCATTGGT",
hash = 4450525736164836098}, {str = "TCAGCATGGTGGTATCAGCCGGCCATTGGTC", hash = 2256129718927353985}, {str = "CAGCATGGTGGTATCAGCCGGCCATTGGTCC", hash = 2069734604864954663}, {
str = "AGCATGGTGGTATCAGCCGGCCATTGGTCCA", hash = 3363813055924180290}, {str = "GCATGGTGGTATCAGCCGGCCATTGGTCCAG", hash = 3525062285613509595}, {str = "CATGGTGGTATCAGCCGGCCATTGGTCCAGT",
hash = 4311457421746396407}, {str = "ATGGTGGTATCAGCCGGCCATTGGTCCAGTG", hash = 4327622163871223678}, {str = "TGGTGGTATCAGCCGGCCATTGGTCCAGTGA", hash = 3239197403685028122}, {
str = "GGTGGTATCAGCCGGCCATTGGTCCAGTGAG", hash = 3180523157265637820}, {str = "GTGGTATCAGCCGGCCATTGGTCCAGTGAGA", hash = 2524758401872098992}, {str = "TGGTATCAGCCGGCCATTGGTCCAGTGAGAA",
hash = 441995249999462078}, {str = "GGTATCAGCCGGCCATTGGTCCAGTGAGAAG", hash = 3584701445611512180}, {str = "GTATCAGCCGGCCATTGGTCCAGTGAGAAGG", hash = 3770292979943305781}, {
str = "TATCAGCCGGCCATTGGTCCAGTGAGAAGGC", hash = 770742035625922299}...}
__for_begin = {str = "CTATTATTATATTCATATCTCTACACTGCAA", hash = 1146667402901346210}
__for_end = {str = "", hash = 0}
readName = "ENST00000652444.1|ENSG00000273136.7|OTTHUMG00000189374.4|OTTHUMT00000502078.1|NBPF26-210|NBPF26|5270|UTR5:1-192|CDS:193-3753|UTR3:3754-5270|"
it = {
ctrl_ = 0x7f9d78093418 "?HX6{\003|\030\065g(54\001\bB\200\200J\200\200\200\004\200r\200NS\017\064D\200\027\003\200\200@\"Fp?&+h\vPLKygaH$\031\200\200\200\200\200\200\t\200@\200h\003sy)\200\200\200\200\030mTk\025d\033u9=H[U\200\200c\\N5zR\035Z\001Cf\037\005\bz\200\067vN\200C\200aV\200_\037\a\030\200\063\200*\200\200F\200\200]q\026r:\030dU QS_'\025\200T\200PTP,\023\200\200n\004", {
slot_ = 0x7f9d780a3a20}}
groupName = "ENSG00000273136.7"
readTag = 107
seq = {first = "ENST00000652444.1|ENSG00000273136.7|OTTHUMG00000189374.4|OTTHUMT00000502078.1|NBPF26-210|NBPF26|5270|UTR5:1-192|CDS:193-3753|UTR3:3754-5270|",
second = std::vector of length 5240, capacity 5270 = {{str = "AGACGGTTACCTGGCACGCTGGCCACATTCT", hash = 2254551858817553998}, {str = "GACGGTTACCTGGCACGCTGGCCACATTCTG",
--Type <RET> for more, q to quit, c to continue without paging--
hash = 1996165039621512424}, {str = "ACGGTTACCTGGCACGCTGGCCACATTCTGC", hash = 911838071752904846}, {str = "CGGTTACCTGGCACGCTGGCCACATTCTGCC", hash = 4015967930525012859}, {
str = "GGTTACCTGGCACGCTGGCCACATTCTGCCT", hash = 4272383346053997102}, {str = "GTTACCTGGCACGCTGGCCACATTCTGCCTC", hash = 2479664610794554676}, {
str = "TTACCTGGCACGCTGGCCACATTCTGCCTCA", hash = 636591433892205168}, {str = "TACCTGGCACGCTGGCCACATTCTGCCTCAC", hash = 1631231667496998417}, {str = "ACCTGGCACGCTGGCCACATTCTGCCTCACT",
hash = 831152466497021057}, {str = "CCTGGCACGCTGGCCACATTCTGCCTCACTC", hash = 1847302335668341920}, {str = "CTGGCACGCTGGCCACATTCTGCCTCACTCT", hash = 3233844935995306034}, {
str = "TGGCACGCTGGCCACATTCTGCCTCACTCTT", hash = 1168977335840258883}, {str = "GGCACGCTGGCCACATTCTGCCTCACTCTTA", hash = 3748912846293994032}, {
str = "GCACGCTGGCCACATTCTGCCTCACTCTTAT", hash = 3665941082336238627}, {str = "CACGCTGGCCACATTCTGCCTCACTCTTATC", hash = 441203803288473399}, {str = "ACGCTGGCCACATTCTGCCTCACTCTTATCA",
hash = 257945315550845575}, {str = "CGCTGGCCACATTCTGCCTCACTCTTATCAG", hash = 2891402199531825250}, {str = "GCTGGCCACATTCTGCCTCACTCTTATCAGA", hash = 316530633463993973}, {
str = "CTGGCCACATTCTGCCTCACTCTTATCAGAG", hash = 1448641423490193246}, {str = "TGGCCACATTCTGCCTCACTCTTATCAGAGT", hash = 4115330216024664760}, {
str = "GGCCACATTCTGCCTCACTCTTATCAGAGTC", hash = 2434589352774224959}, {str = "GCCACATTCTGCCTCACTCTTATCAGAGTCT", hash = 942112201614284906}, {str = "CCACATTCTGCCTCACTCTTATCAGAGTCTG",
hash = 2958853833341002029}, {str = "CACATTCTGCCTCACTCTTATCAGAGTCTGA", hash = 247507700326570120}, {str = "ACATTCTGCCTCACTCTTATCAGAGTCTGAG", hash = 2582019024410939386}, {
str = "CATTCTGCCTCACTCTTATCAGAGTCTGAGC", hash = 3650312714249167636}, {str = "ATTCTGCCTCACTCTTATCAGAGTCTGAGCT", hash = 296336788211557578}, {str = "TTCTGCCTCACTCTTATCAGAGTCTGAGCTA",
hash = 1315964255860094039}, {str = "TCTGCCTCACTCTTATCAGAGTCTGAGCTAC", hash = 245686812559436375}, {str = "CTGCCTCACTCTTATCAGAGTCTGAGCTACT", hash = 3549205002543762473}, {
str = "TGCCTCACTCTTATCAGAGTCTGAGCTACTG", hash = 2444285775868316950}, {str = "GCCTCACTCTTATCAGAGTCTGAGCTACTGG", hash = 611076699933310163}, {str = "CCTCACTCTTATCAGAGTCTGAGCTACTGGC",
hash = 2808089598425270100}, {str = "CTCACTCTTATCAGAGTCTGAGCTACTGGCA", hash = 707355416505402297}, {str = "TCACTCTTATCAGAGTCTGAGCTACTGGCAG", hash = 240511854568802354}, {
str = "CACTCTTATCAGAGTCTGAGCTACTGGCAGT", hash = 1678502363967558050}, {str = "ACTCTTATCAGAGTCTGAGCTACTGGCAGTG", hash = 1041595707067937876}, {
str = "CTCTTATCAGAGTCTGAGCTACTGGCAGTGC", hash = 3119407113272679071}, {str = "TCTTATCAGAGTCTGAGCTACTGGCAGTGCT", hash = 1543754669554786414}, {
str = "CTTATCAGAGTCTGAGCTACTGGCAGTGCTT", hash = 561576121085706351}, {str = "TTATCAGAGTCTGAGCTACTGGCAGTGCTTT", hash = 3315694266711686348}, {str = "TATCAGAGTCTGAGCTACTGGCAGTGCTTTC",
hash = 828423232329585095}, {str = "ATCAGAGTCTGAGCTACTGGCAGTGCTTTCA", hash = 1287560095959574925}, {str = "TCAGAGTCTGAGCTACTGGCAGTGCTTTCAG", hash = 2089786310162126963}, {
str = "CAGAGTCTGAGCTACTGGCAGTGCTTTCAGC", hash = 3009753470430141545}, {str = "AGAGTCTGAGCTACTGGCAGTGCTTTCAGCT", hash = 2489298446322669822}, {
str = "GAGTCTGAGCTACTGGCAGTGCTTTCAGCTC", hash = 479562323485946792}, {str = "AGTCTGAGCTACTGGCAGTGCTTTCAGCTCT", hash = 674042932385701191}, {str = "GTCTGAGCTACTGGCAGTGCTTTCAGCTCTG",
hash = 1322496201497159345}, {str = "TCTGAGCTACTGGCAGTGCTTTCAGCTCTGA", hash = 3575072688005183157}, {str = "CTGAGCTACTGGCAGTGCTTTCAGCTCTGAG", hash = 3032390211470423597}, {
str = "TGAGCTACTGGCAGTGCTTTCAGCTCTGAGT", hash = 1294155751004892326}, {str = "GAGCTACTGGCAGTGCTTTCAGCTCTGAGTT", hash = 3211535873037916855}, {
str = "AGCTACTGGCAGTGCTTTCAGCTCTGAGTTG", hash = 121542489420289114}, {str = "GCTACTGGCAGTGCTTTCAGCTCTGAGTTGA", hash = 335917423857352574}, {str = "CTACTGGCAGTGCTTTCAGCTCTGAGTTGAG",
hash = 3443688301786490113}, {str = "TACTGGCAGTGCTTTCAGCTCTGAGTTGAGG", hash = 1145676817919776818}, {str = "ACTGGCAGTGCTTTCAGCTCTGAGTTGAGGC", hash = 2005725393344124583}, {
str = "CTGGCAGTGCTTTCAGCTCTGAGTTGAGGCA", hash = 587306996403439853}, {str = "TGGCAGTGCTTTCAGCTCTGAGTTGAGGCAC", hash = 4390786559099807586}, {str = "GGCAGTGCTTTCAGCTCTGAGTTGAGGCACC",
hash = 445248530543031580}, {str = "GCAGTGCTTTCAGCTCTGAGTTGAGGCACCT", hash = 2010519152598947319}, {str = "CAGTGCTTTCAGCTCTGAGTTGAGGCACCTC", hash = 4497223724559814257}, {
str = "AGTGCTTTCAGCTCTGAGTTGAGGCACCTCG", hash = 2071722768031345372}, {str = "GTGCTTTCAGCTCTGAGTTGAGGCACCTCGA", hash = 1141106766873699820}, {
str = "TGCTTTCAGCTCTGAGTTGAGGCACCTCGAA", hash = 3244163357727748346}, {str = "GCTTTCAGCTCTGAGTTGAGGCACCTCGAAC", hash = 1656122848133201861}, {
str = "CTTTCAGCTCTGAGTTGAGGCACCTCGAACC", hash = 2228449759377119889}, {str = "TTTCAGCTCTGAGTTGAGGCACCTCGAACCT", hash = 2662986646517476834}, {
str = "TTCAGCTCTGAGTTGAGGCACCTCGAACCTT", hash = 1987029516908448409}, {str = "TCAGCTCTGAGTTGAGGCACCTCGAACCTTG", hash = 3827662942990249191}, {
str = "CAGCTCTGAGTTGAGGCACCTCGAACCTTGT", hash = 3809341794819965732}, {str = "AGCTCTGAGTTGAGGCACCTCGAACCTTGTT", hash = 2363478906874504245}, {
str = "GCTCTGAGTTGAGGCACCTCGAACCTTGTTT", hash = 1922293509812585869}, {str = "CTCTGAGTTGAGGCACCTCGAACCTTGTTTT", hash = 53401290648749005}, {str = "TCTGAGTTGAGGCACCTCGAACCTTGTTTTT",
hash = 3205735485356737045}, {str = "CTGAGTTGAGGCACCTCGAACCTTGTTTTTG", hash = 468888342982612373}, {str = "TGAGTTGAGGCACCTCGAACCTTGTTTTTGT", hash = 947343282128958660}, {
str = "GAGTTGAGGCACCTCGAACCTTGTTTTTGTG", hash = 236844614477782314}, {str = "AGTTGAGGCACCTCGAACCTTGTTTTTGTGG", hash = 1331535823026163987}, {str = "GTTGAGGCACCTCGAACCTTGTTTTTGTGGT",
hash = 2494259516010959779}, {str = "TTGAGGCACCTCGAACCTTGTTTTTGTGGTG", hash = 1062393378741614186}, {str = "TGAGGCACCTCGAACCTTGTTTTTGTGGTGA", hash = 170815810740753088}, {
str = "GAGGCACCTCGAACCTTGTTTTTGTGGTGAA", hash = 2869577203141326574}, {str = "AGGCACCTCGAACCTTGTTTTTGTGGTGAAG", hash = 3233781874593896978}, {
str = "GGCACCTCGAACCTTGTTTTTGTGGTGAAGG", hash = 191422059116575878}, {str = "GCACCTCGAACCTTGTTTTTGTGGTGAAGGA", hash = 3060014008806828422}, {str = "CACCTCGAACCTTGTTTTTGTGGTGAAGGAT",
hash = 3053859390691900972}, {str = "ACCTCGAACCTTGTTTTTGTGGTGAAGGATC", hash = 1969474515609339547}, {str = "CCTCGAACCTTGTTTTTGTGGTGAAGGATCC", hash = 1569715708791399399}, {
str = "CTCGAACCTTGTTTTTGTGGTGAAGGATCCT", hash = 3980077008885818517}, {str = "TCGAACCTTGTTTTTGTGGTGAAGGATCCTA", hash = 3858915067637104041}, {
str = "CGAACCTTGTTTTTGTGGTGAAGGATCCTAA", hash = 1749778749645656557}, {str = "GAACCTTGTTTTTGTGGTGAAGGATCCTAAA", hash = 3318370844936342950}, {
str = "AACCTTGTTTTTGTGGTGAAGGATCCTAAAG", hash = 438733748386020317}, {str = "ACCTTGTTTTTGTGGTGAAGGATCCTAAAGT", hash = 1266695843539912779}, {str = "CCTTGTTTTTGTGGTGAAGGATCCTAAAGTG",
hash = 4488483402798802422}, {str = "CTTGTTTTTGTGGTGAAGGATCCTAAAGTGC", hash = 730172355147591281}, {str = "TTGTTTTTGTGGTGAAGGATCCTAAAGTGCT", hash = 2474376210175592629}, {
str = "TGTTTTTGTGGTGAAGGATCCTAAAGTGCTG", hash = 1505986440969705052}, {str = "GTTTTTGTGGTGAAGGATCCTAAAGTGCTGT", hash = 3342229182468857549}, {
str = "TTTTTGTGGTGAAGGATCCTAAAGTGCTGTG", hash = 3489770027088411190}, {str = "TTTTGTGGTGAAGGATCCTAAAGTGCTGTGG", hash = 2728595802550773257}, {
str = "TTTGTGGTGAAGGATCCTAAAGTGCTGTGGG", hash = 1790372557164072706}, {str = "TTGTGGTGAAGGATCCTAAAGTGCTGTGGGG", hash = 201118124230238389}, {str = "TGTGGTGAAGGATCCTAAAGTGCTGTGGGGA",
hash = 2394822784416752305}, {str = "GTGGTGAAGGATCCTAAAGTGCTGTGGGGAG", hash = 2913766816999737430}, {str = "TGGTGAAGGATCCTAAAGTGCTGTGGGGAGT", hash = 1083957273912470088}, {
str = "GGTGAAGGATCCTAAAGTGCTGTGGGGAGTG", hash = 3745063112234500599}, {str = "GTGAAGGATCCTAAAGTGCTGTGGGGAGTGA", hash = 3861413813787749834}, {
str = "TGAAGGATCCTAAAGTGCTGTGGGGAGTGAT", hash = 3885518273234845771}, {str = "GAAGGATCCTAAAGTGCTGTGGGGAGTGATC", hash = 1634305373162946385}, {
str = "AAGGATCCTAAAGTGCTGTGGGGAGTGATCA", hash = 1476913983044073012}, {str = "AGGATCCTAAAGTGCTGTGGGGAGTGATCAC", hash = 1500480655010954197}, {
str = "GGATCCTAAAGTGCTGTGGGGAGTGATCACA", hash = 4006205886304171677}, {str = "GATCCTAAAGTGCTGTGGGGAGTGATCACAT", hash = 1063684948851989967}, {
str = "ATCCTAAAGTGCTGTGGGGAGTGATCACATT", hash = 401818696385865246}, {str = "TCCTAAAGTGCTGTGGGGAGTGATCACATTT", hash = 1143511543895623406}, {str = "CCTAAAGTGCTGTGGGGAGTGATCACATTTT",
hash = 1330522762486075652}, {str = "CTAAAGTGCTGTGGGGAGTGATCACATTTTT", hash = 3929957634986999729}, {str = "TAAAGTGCTGTGGGGAGTGATCACATTTTTC", hash = 2312910985735615464}, {
str = "AAAGTGCTGTGGGGAGTGATCACATTTTTCA", hash = 820186674076609}, {str = "AAGTGCTGTGGGGAGTGATCACATTTTTCAC", hash = 3370990190170701557}, {str = "AGTGCTGTGGGGAGTGATCACATTTTTCACA",
hash = 1091444764667477315}, {str = "GTGCTGTGGGGAGTGATCACATTTTTCACAA", hash = 1144025050478085607}, {str = "TGCTGTGGGGAGTGATCACATTTTTCACAAC", hash = 4193240014992342969}, {
str = "GCTGTGGGGAGTGATCACATTTTTCACAACA", hash = 4341555630426971271}, {str = "CTGTGGGGAGTGATCACATTTTTCACAACAT", hash = 1115824875535599130}, {
str = "TGTGGGGAGTGATCACATTTTTCACAACATC", hash = 160538575247996201}, {str = "GTGGGGAGTGATCACATTTTTCACAACATCC", hash = 2697010907119358398}, {str = "TGGGGAGTGATCACATTTTTCACAACATCCC",
--Type <RET> for more, q to quit, c to continue without paging--
hash = 3402997797233763310}, {str = "GGGGAGTGATCACATTTTTCACAACATCCCT", hash = 378793474996132379}, {str = "GGGAGTGATCACATTTTTCACAACATCCCTG", hash = 19230252280190883}, {
str = "GGAGTGATCACATTTTTCACAACATCCCTGA", hash = 1649508160331788655}, {str = "GAGTGATCACATTTTTCACAACATCCCTGAC", hash = 806478536352191152}, {str = "AGTGATCACATTTTTCACAACATCCCTGACT",
hash = 1820404173726756025}, {str = "GTGATCACATTTTTCACAACATCCCTGACTC", hash = 3527810998427043549}, {str = "TGATCACATTTTTCACAACATCCCTGACTCC", hash = 2075155407435972072}, {
str = "GATCACATTTTTCACAACATCCCTGACTCCA", hash = 1127999080839452634}, {str = "ATCACATTTTTCACAACATCCCTGACTCCAC", hash = 1247740405191436658}, {
str = "TCACATTTTTCACAACATCCCTGACTCCACC", hash = 4496025521531630549}, {str = "CACATTTTTCACAACATCCCTGACTCCACCT", hash = 4435943802419625410}, {
str = "ACATTTTTCACAACATCCCTGACTCCACCTC", hash = 2871562830076073001}, {str = "CATTTTTCACAACATCCCTGACTCCACCTCT", hash = 2596204754767475617}, {
str = "ATTTTTCACAACATCCCTGACTCCACCTCTT", hash = 1302134788684360238}, {str = "TTTTTCACAACATCCCTGACTCCACCTCTTC", hash = 4521348037573308258}, {
str = "TTTTCACAACATCCCTGACTCCACCTCTTCT", hash = 2780220349519292211}, {str = "TTTCACAACATCCCTGACTCCACCTCTTCTG", hash = 1107921276454453298}, {
str = "TTCACAACATCCCTGACTCCACCTCTTCTGC", hash = 3454457882883078983}, {str = "TCACAACATCCCTGACTCCACCTCTTCTGCC", hash = 3017349983201059787}, {
str = "CACAACATCCCTGACTCCACCTCTTCTGCCA", hash = 2876529903293581824}, {str = "ACAACATCCCTGACTCCACCTCTTCTGCCAC", hash = 2232424657824055260}, {
str = "CAACATCCCTGACTCCACCTCTTCTGCCACA", hash = 1945906454116299913}, {str = "AACATCCCTGACTCCACCTCTTCTGCCACAA", hash = 1680107508649525421}, {
str = "ACATCCCTGACTCCACCTCTTCTGCCACAAA", hash = 2074414744142747167}, {str = "CATCCCTGACTCCACCTCTTCTGCCACAAAC", hash = 658327886323735941}, {str = "ATCCCTGACTCCACCTCTTCTGCCACAAACG",
hash = 1544415177791218207}, {str = "TCCCTGACTCCACCTCTTCTGCCACAAACGT", hash = 3253088371227032224}, {str = "CCCTGACTCCACCTCTTCTGCCACAAACGTC", hash = 3064296971755776164}, {
str = "CCTGACTCCACCTCTTCTGCCACAAACGTCA", hash = 722000307740867477}, {str = "CTGACTCCACCTCTTCTGCCACAAACGTCAG", hash = 3380417266733848752}, {str = "TGACTCCACCTCTTCTGCCACAAACGTCAGC",
hash = 1024110441529798690}, {str = "GACTCCACCTCTTCTGCCACAAACGTCAGCA", hash = 863524341638087719}, {str = "ACTCCACCTCTTCTGCCACAAACGTCAGCAT", hash = 3468814548236365514}, {
str = "CTCCACCTCTTCTGCCACAAACGTCAGCATG", hash = 2508580578508573283}, {str = "TCCACCTCTTCTGCCACAAACGTCAGCATGG", hash = 1199375686733191947}, {
str = "CCACCTCTTCTGCCACAAACGTCAGCATGGT", hash = 1405549925218823208}, {str = "CACCTCTTCTGCCACAAACGTCAGCATGGTG", hash = 1381498968553634593}, {
str = "ACCTCTTCTGCCACAAACGTCAGCATGGTGG", hash = 3965801941219655628}, {str = "CCTCTTCTGCCACAAACGTCAGCATGGTGGT", hash = 2862570124473923200}, {
str = "CTCTTCTGCCACAAACGTCAGCATGGTGGTA", hash = 2117806657029414218}, {str = "TCTTCTGCCACAAACGTCAGCATGGTGGTAT", hash = 4237877294863040328}, {
str = "CTTCTGCCACAAACGTCAGCATGGTGGTATC", hash = 594732706441401553}, {str = "TTCTGCCACAAACGTCAGCATGGTGGTATCA", hash = 3150617693369099126}, {str = "TCTGCCACAAACGTCAGCATGGTGGTATCAG",
hash = 224490576667288081}, {str = "CTGCCACAAACGTCAGCATGGTGGTATCAGC", hash = 4029596087638654157}, {str = "TGCCACAAACGTCAGCATGGTGGTATCAGCC", hash = 4532072366792155982}, {
str = "GCCACAAACGTCAGCATGGTGGTATCAGCCG", hash = 2046036368442275799}, {str = "CCACAAACGTCAGCATGGTGGTATCAGCCGG", hash = 3359175068922139095}, {
str = "CACAAACGTCAGCATGGTGGTATCAGCCGGC", hash = 2325649399371222295}, {str = "ACAAACGTCAGCATGGTGGTATCAGCCGGCC", hash = 2195910845236455514}, {
str = "CAAACGTCAGCATGGTGGTATCAGCCGGCCA", hash = 3890825450486026077}, {str = "AAACGTCAGCATGGTGGTATCAGCCGGCCAT", hash = 2339612393558708297}, {
str = "AACGTCAGCATGGTGGTATCAGCCGGCCATT", hash = 4534107598043968953}, {str = "ACGTCAGCATGGTGGTATCAGCCGGCCATTG", hash = 3674804131437745199}, {
str = "CGTCAGCATGGTGGTATCAGCCGGCCATTGG", hash = 1258588623067523580}, {str = "GTCAGCATGGTGGTATCAGCCGGCCATTGGT", hash = 4450525736164836098}, {
str = "TCAGCATGGTGGTATCAGCCGGCCATTGGTC", hash = 2256129718927353985}, {str = "CAGCATGGTGGTATCAGCCGGCCATTGGTCC", hash = 2069734604864954663}, {
str = "AGCATGGTGGTATCAGCCGGCCATTGGTCCA", hash = 3363813055924180290}, {str = "GCATGGTGGTATCAGCCGGCCATTGGTCCAG", hash = 3525062285613509595}, {
str = "CATGGTGGTATCAGCCGGCCATTGGTCCAGT", hash = 4311457421746396407}, {str = "ATGGTGGTATCAGCCGGCCATTGGTCCAGTG", hash = 4327622163871223678}, {
str = "TGGTGGTATCAGCCGGCCATTGGTCCAGTGA", hash = 3239197403685028122}, {str = "GGTGGTATCAGCCGGCCATTGGTCCAGTGAG", hash = 3180523157265637820}, {
str = "GTGGTATCAGCCGGCCATTGGTCCAGTGAGA", hash = 2524758401872098992}, {str = "TGGTATCAGCCGGCCATTGGTCCAGTGAGAA", hash = 441995249999462078}, {str = "GGTATCAGCCGGCCATTGGTCCAGTGAGAAG",
hash = 3584701445611512180}, {str = "GTATCAGCCGGCCATTGGTCCAGTGAGAAGG", hash = 3770292979943305781}, {str = "TATCAGCCGGCCATTGGTCCAGTGAGAAGGC", hash = 770742035625922299}...}}
__for_range = @0x55940461a630: {<phmap::priv::raw_hash_map<phmap::priv::FlatHashMapPolicy<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::vector<kmer_row, std::allocator<kmer_row> > >, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::vector<kmer_row, std::allocator<kmer_row> > > > >> = {<phmap::priv::raw_hash_set<phmap::priv::FlatHashMapPolicy<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::vector<kmer_row, std::allocator<kmer_row> > >, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::vector<kmer_row, std::allocator<kmer_row> > > > >> = {
ctrl_ = 0x55940d93ce20 "\030H\200\020-JsPe\006\b.-Y\f \027co\023\033\027\002Ph%oo\200\200\200\200*.\200M\017k\200\200\200\200\a\200T\200c\200L\tvBk\023y0V4\b\200\200Ab\200iF\200\200c\200J\200\200\200\200\001N}\200T\032\067\027d m[_\020W\031:nNs\200vH\037Q-2t\023@`YF\200\200G=", slots_ = 0x55940d93d630, size_ = 1500, capacity_ = 2047, infoz_ = {<No data fields>},
settings_ = {<phmap::priv::internal_compressed_tuple::CompressedTupleImpl<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::vector<kmer_row, std::allocator<kmer_row> > > > >, phmap::integer_sequence<unsigned long, 0, 1, 2, 3> >> = {<phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::vector<kmer_row, std::allocator<kmer_row> > > > >, 0, false>> = {
value = 292}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::vector<kmer_row, std::allocator<kmer_row> > > > >, 1, true>> = {<phmap::priv::StringHashT<char>> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::vector<kmer_row, std::allocator<kmer_row> > > > >, 2, true>> = {<phmap::priv::StringHashEqT<char>::Eq> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::vector<kmer_row, std::allocator<kmer_row> > > > >, 3, true>> = {<std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::vector<kmer_row, std::allocator<kmer_row> > > >> = {<__gnu_cxx::new_allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::vector<kmer_row, std::allocator<kmer_row> > > >> = {<No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}}, <No data fields>}, <No data fields>}
__for_begin = {
ctrl_ = 0x55940d93d228 "?HX6{\003|\030\065g(54\001\bB\200\200J\200\200\200\004\200r\200NS\017\064D\200\027\003\200\200@\"Fp?&+h\vPLKygaH$\031\200\200\200\200\200\200\t\200@\200h\003sy)\200\200\200\200\030mTk\025d\033u9=H[U\200\200c\\N5zR\035Z\001Cf\037\005\bz\200\067vN\200C\200aV\200_\037\a\030\200\063\200*\200\200F\200\200]q\026r:\030dU QS_'\025\200T\200PTP,\023\200\200n\004", {
slot_ = 0x55940d94b7f0}}
--Type <RET> for more, q to quit, c to continue without paging--
__for_end = {ctrl_ = 0x55940d93d61f "\377\030H\200\020-JsPe\006\b.-Y\f \260o-\a\224U", {slot_ = 0x55940d93d630}}
KD_ERROR_CHUNK = <incomplete type>
convertMap = {<phmap::priv::raw_hash_map<phmap::priv::FlatHashMapPolicy<unsigned long, unsigned long>, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >> = {<phmap::priv::raw_hash_set<phmap::priv::FlatHashMapPolicy<unsigned long, unsigned long>, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >> = {ctrl_ = 0x55940466ecd0 "", slots_ = 0x55940466ed60, size_ = 83, capacity_ = 127, infoz_ = {<No data fields>},
settings_ = {<phmap::priv::internal_compressed_tuple::CompressedTupleImpl<phmap::priv::CompressedTuple<unsigned long, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >, phmap::integer_sequence<unsigned long, 0, 1, 2, 3> >> = {<phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >, 0, false>> = {
value = 29}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >, 1, true>> = {<phmap::Hash<unsigned long>> = {<phmap::phmap_unary_function<unsigned long, unsigned long>> = {<No data fields>}, <No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >, 2, true>> = {<phmap::EqualTo<unsigned long>> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >, 3, true>> = {<std::allocator<std::pair<unsigned long const, unsigned long> >> = {<__gnu_cxx::new_allocator<std::pair<unsigned long const, unsigned long> >> = {<No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}}, <No data fields>}, <No data fields>}
namesMap = {<phmap::priv::raw_hash_map<phmap::priv::FlatHashMapPolicy<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >> = {<phmap::priv::raw_hash_set<phmap::priv::FlatHashMapPolicy<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >> = {
ctrl_ = 0x7f9d78093010 "\030H\200\020-JsPe\006\b.-Y\f \027co\023\033\027\002Ph%oo\200\200\200\200*.\200M\017k\200\200\200\200\a\200T\200c\200L\tvBk\023y0V4\b\200\200Ab\200iF\200\200c\200J\200\200\200\200\001N}\200T\032\067\027d m[_\020W\031:nNs\200vH\037Q-2t\023@`YF\200\200G=", slots_ = 0x7f9d78093820, size_ = 1500, capacity_ = 2047, infoz_ = {<No data fields>},
settings_ = {<phmap::priv::internal_compressed_tuple::CompressedTupleImpl<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, phmap::integer_sequence<unsigned long, 0, 1, 2, 3> >> = {<phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, 0, false>> = {
value = 292}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, 1, true>> = {<phmap::priv::StringHashT<char>> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, 2, true>> = {<phmap::priv::StringHashEqT<char>::Eq> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, 3, true>> = {<std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >> = {<__gnu_cxx::new_allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >> = {<No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}}, <No data fields>}, <No data fields>}
tagsMap = {<phmap::priv::raw_hash_map<phmap::priv::FlatHashMapPolicy<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long>, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >> = {<phmap::priv::raw_hash_set<phmap::priv::FlatHashMapPolicy<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long>, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >> = {
ctrl_ = 0x559412de1190 "JT\\k\033U\200\200vz\200X\200\200\200_\036=\200\200\200\200\200\200\200\200\200F`\\\200\200\200\060\021@|1\200!1\200n'\200\200\200q\020\071\200\200\200**\200C\200\002\200#\200I\025\f\001\200\062n\200M\200\200\200\200\200_\200\023\200\060JU\200@zx{Ch}\200\t5\200\200h7\b\200\200\200\200\200\200\t\200\200\061D:\200\200\200d\200\200\003a\030\200\200\200\200L", '\200' <repeats 11 times>, "E\200#\031\200\200\200\200\200\200\200_/\200?\200\200\030\200\200u\200\017\200\034\200\004\033\ah\200\006\037;}\200\200\200\035\f\006\200[\200pf\200\200\vQ*\032\006\t\200lZ\200\200LEndq"..., slots_ = 0x559412de19a0, size_ = 957, capacity_ = 2047, infoz_ = {<No data fields>},
settings_ = {<phmap::priv::internal_compressed_tuple::CompressedTupleImpl<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, phmap::integer_sequence<unsigned long, 0, 1, 2, 3> >> = {<phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 0, false>> = {
value = 835}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 1, true>> = {<phmap::priv::StringHashT<char>> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 2, true>> = {<phmap::priv::StringHashEqT<char>::Eq> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 3, true>> = {<std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_t--Type <RET> for more, q to quit, c to continue without paging--
raits<char>, std::allocator<char> > const, unsigned long> >> = {<__gnu_cxx::new_allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> >> = {<No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}}, <No data fields>}, <No data fields>}
groupNameMap = {<phmap::priv::raw_hash_map<phmap::priv::FlatHashMapPolicy<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long>, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >> = {<phmap::priv::raw_hash_set<phmap::priv::FlatHashMapPolicy<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long>, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >> = {
ctrl_ = 0x559404650660 "\005+\200\200\200X\027\200\200E\200\200\tHz\200c\200\062\062xbHrM(\034;[(o8\001!`<LA\002Sve\200\037\200\200\017\200|\200:\200\037\001c\200,%nY\200$=\035dKd\200\200\200\200\033qR\023\200[\200\200yZ\bC\200Z\200\200\200e@ZB#T2\n<\001\200\061M\200\200\063-\tt\200\035:H\200\rt~1_\200w\200P1'\200V\200_j \036\023(\034ei#\025\vOXV9\fEnQ4\016v,\fp\b\f\200=+\200s\200\200\200\200\200\021\016\200\200\200\200\200\200\003-\200\200p\200\200\200\"\200R\t\200+X\rFJ:O\t4Fly{\002\a"..., slots_ = 0x559404650870, size_ = 365, capacity_ = 511,
infoz_ = {<No data fields>},
settings_ = {<phmap::priv::internal_compressed_tuple::CompressedTupleImpl<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, phmap::integer_sequence<unsigned long, 0, 1, 2, 3> >> = {<phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 0, false>> = {
value = 83}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 1, true>> = {<phmap::priv::StringHashT<char>> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 2, true>> = {<phmap::priv::StringHashEqT<char>::Eq> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 3, true>> = {<std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> >> = {<__gnu_cxx::new_allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> >> = {<No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}}, <No data fields>}, <No data fields>}
legend = 0x559404615fc0
colorsCount = {<phmap::priv::raw_hash_map<phmap::priv::FlatHashMapPolicy<unsigned long, unsigned long>, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >> = {<phmap::priv::raw_hash_set<phmap::priv::FlatHashMapPolicy<unsigned long, unsigned long>, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >> = {ctrl_ = 0x55940466a8c0 "", slots_ = 0x55940466acd0, size_ = 710, capacity_ = 1023, infoz_ = {<No data fields>},
settings_ = {<phmap::priv::internal_compressed_tuple::CompressedTupleImpl<phmap::priv::CompressedTuple<unsigned long, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >, phmap::integer_sequence<unsigned long, 0, 1, 2, 3> >> = {<phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >, 0, false>> = {
value = 186}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >, 1, true>> = {<phmap::Hash<unsigned long>> = {<phmap::phmap_unary_function<unsigned long, unsigned long>> = {<No data fields>}, <No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >, 2, true>> = {<phmap::EqualTo<unsigned long>> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::Hash<unsigned long>, phmap::EqualTo<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >, 3, true>> = {<std::allocator<std::pair<unsigned long const, unsigned long> >> = {<__gnu_cxx::new_allocator<std::pair<unsigned long const, unsigned long> >> = {<No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}}, <No data fields>}, <No data fields>}
readID = 734
groupID = 710
namesFile = <incomplete type>
seqName = "ENST00000359205.9|ENSG00000163374.20|OTTHUMG00000035437.8|OTTHUMT00000086021.2|YY1AP1-206|YY1AP1|2690|UTR5:1-259|CDS:260-2479|UTR3:2480-2690|"
groupName = "ENSG00000163374.20"
line = ""
freeColors = std::priority_queue wrapping: std::vector of length 3, capacity 16 = {511, 692, 590}
groupCounter = {<phmap::priv::raw_hash_map<phmap::priv::FlatHashMapPolicy<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long>, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >> = {<phmap::priv::raw_hash_set<phmap::priv::FlatHashMapPolicy<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned long>, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >> = {
ctrl_ = 0x55940464b470 "\005+\200\200\200X\027\200\200E\200\200\tHz\200c\200\062\062xbHrM(\034;[(o8\001!`<LA\002Sve\200\037\200\200\017\200|\200:\200\037\001c\200,%nY\200$=\035dKd\200\200\200\200\033qR\023\200[\200\200yZ\bC\200Z\200\200\200e@ZB#T2\n<\001\200\061M\200\200\063-\tt\200\035:H\200\rt~1_\200w\200P1'\200V\200_j \036\023(\034ei#\025\vOXV9\fEnQ4\016v,\fp\b\f\200=+\200s\200\200\200\200\200\021\016\200\200\200\200\200\200\003-\200\200p\200\200\200\"\200R\t\200+X\rFJ:O\t4Fly{\002\a"..., slots_ = 0x55940464b680, size_ = 365, capacity_ = 511,
infoz_ = {<No data fields>},
settings_ = {<phmap::priv::internal_compressed_tuple::CompressedTupleImpl<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, phmap::integer_sequence<unsigned long, 0, 1, 2, 3> >> = {<phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 0, false>> = {
value = 83}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, s--Type <RET> for more, q to quit, c to continue without paging--
td::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 1, true>> = {<phmap::priv::StringHashT<char>> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 2, true>> = {<phmap::priv::StringHashEqT<char>::Eq> = {<No data fields>}, <No data fields>}, <phmap::priv::internal_compressed_tuple::Storage<phmap::priv::CompressedTuple<unsigned long, phmap::priv::StringHashT<char>, phmap::priv::StringHashEqT<char>::Eq, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> > >, 3, true>> = {<std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> >> = {<__gnu_cxx::new_allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned long> >> = {<No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}, <No data fields>}}, <No data fields>}, <No data fields>}
frames = std::vector of length 0, capacity 0
kmer = ""
chunk_id = 1
col = 0x0
#3 0x0000559401cd5c1a in kProcessor::index (frame=0x559404615b10, parse_params=std::map with 2 elements = {...},
filename="/home/mabuelanin/dib-dev/kmerDecoder/human_pc.fa.split/human_pc.part_001.fa.split/human_pc.part_001.part_004.fa", chunk_size=1500,
names_fileName="/home/mabuelanin/dib-dev/kmerDecoder/human_pc.fa.split/human_pc.part_001.fa.split/human_pc.part_001.part_004.fa.names")
at /home/mabuelanin/dib-dev/kp_examples/indexing/lib/kProcessor/src/algorithms.cpp:1157
mode = "kmers"
check_mode = false
KD = 0x55940461a620
#4 0x0000559401cc963b in main (argc=<optimized out>, argv=<optimized out>) at /usr/include/c++/9/ext/new_allocator.h:80
kSize = 31
path = "/home/mabuelanin/dib-dev/kmerDecoder/human_pc.fa.split/human_pc.part_001.fa.split/"
genes_file = "/home/mabuelanin/dib-dev/kmerDecoder/human_pc.fa.split/human_pc.part_001.fa.split/human_pc.part_001.part_004.fa"
genesFrame = 0x559404615b10
KMERS = <optimized out>
It's also failing on the development
& master
branches.
This bug is related to the parsing of Fasta headers. Here are the same test (FASTA & NAMES) files with altered headers and it's working. focus.tar.gz
Still debugging for a reason.
Just to keep tracking of this mysterious demonized ghosty bug...
Indexing with
After HOURS of debugging with @drtamermansour , this bug happened because the free colors are not removed from the tagsMap, only from the legend. Which leads us to the point that the colors' freeing code is not working properly. The fix will increase the performance and reduce the memory.
Branch:
v2
Indexing is working fine with a small number of sequences. I tried to index the Gencode protein-coding transcripts by genes and it's failing.
Tests ran on Farm with a
100GB
RAM limit.Reproduce:
Indexing test
Error: