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dib-lab
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kProcessor
kProcessor: kmers processing framework.
https://kprocessor.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Parallel Kmer Counting
#53
shokrof
opened
4 years ago
0
KmerLoader Jellyfish
#52
shokrof
opened
4 years ago
0
kmerLoader(KMC)
#51
shokrof
opened
4 years ago
0
Design vangaurd system
#50
shokrof
opened
4 years ago
0
Create Color Columns(graph)
#49
shokrof
opened
4 years ago
0
Create Color Columns(wavelet tree)
#48
shokrof
opened
4 years ago
0
Create Color Columns(Bit vector)
#47
shokrof
opened
4 years ago
0
Create Color Columns(Int vector)
#46
shokrof
closed
4 years ago
0
redesign multiple columns
#45
shokrof
closed
4 years ago
0
Adding Batch Query Feature
#44
mr-eyes
closed
4 years ago
0
MQF causes significant loss of kmers without failure
#43
mr-eyes
closed
4 years ago
3
DeSerialization of PHMAP takes ∞
#42
mr-eyes
closed
4 years ago
2
Names parsing bug
#41
mr-eyes
closed
4 years ago
0
Murmur Hashing losses significant number of kmers
#40
mr-eyes
closed
3 years ago
6
Buffered MQF doesnt have save function
#39
mr-eyes
closed
4 years ago
3
Indexing failed with huge number of sequences
#38
mr-eyes
opened
4 years ago
2
bufferedMQF_integration failed to build
#37
mr-eyes
closed
4 years ago
1
use the parse function that uses kmer decoder
#36
shokrof
closed
4 years ago
1
Updates
#35
mr-eyes
closed
4 years ago
1
Replace Murmur with xxHash
#34
mr-eyes
opened
4 years ago
5
input kmer quality check
#33
drtamermansour
opened
4 years ago
2
refactor the test suites
#32
shokrof
closed
4 years ago
1
Use kmerDecoder in parseSequences
#31
shokrof
closed
4 years ago
2
Python Wrapper for multicolumn dataframe
#30
shokrof
opened
5 years ago
4
Block tag in MQF
#29
shokrof
opened
5 years ago
2
bufferedMQF fails when load_factor exceeds 0.9
#28
ghost
closed
4 years ago
0
Major Updates
#27
mr-eyes
closed
5 years ago
14
kDataFrameMQF constructor can't be used in indexing
#26
mr-eyes
closed
4 years ago
1
Loading the kDataFrame with the appropriate hashing mode
#25
mr-eyes
closed
4 years ago
1
Serialize the kDataFrame in a single file
#24
mr-eyes
opened
5 years ago
0
Build manylinux wheels
#23
mr-eyes
opened
5 years ago
0
Generate Linux universal binaries
#22
mr-eyes
opened
5 years ago
0
Create new kProcessorApp CLI
#21
mr-eyes
opened
5 years ago
0
Build the Python Interface from CMAKE
#20
mr-eyes
closed
3 years ago
0
kmerDecoder deep copy constructor
#19
mr-eyes
opened
5 years ago
0
Wrap C++ exceptions into a Python exception instead.
#18
mr-eyes
opened
5 years ago
0
kDataFrameMAP set functions
#17
mr-eyes
opened
5 years ago
0
BufferedMQF integration
#16
ghost
closed
5 years ago
0
patching python wrapper "Fix namesMap"
#15
mr-eyes
closed
5 years ago
0
BufferedMQF
#14
ghost
closed
5 years ago
0
Fix namesMap issue
#13
mr-eyes
closed
5 years ago
1
Unexpected output of indexing many sequences Vs. small names number.
#12
mr-eyes
closed
5 years ago
2
compare and contrast counting functions with khmer
#11
ctb
opened
5 years ago
0
Pythonic API upgrades
#10
ctb
opened
5 years ago
0
bug fix
#9
mr-eyes
closed
5 years ago
0
get the hashed kmer in unordered map
#8
shokrof
closed
4 years ago
1
use namespace in all the kprocessors classes
#7
shokrof
opened
5 years ago
0
end() function returns an static object and not creating it every time
#6
shokrof
opened
5 years ago
0
Fix indexing bug
#5
mr-eyes
closed
5 years ago
2
getColors fix
#4
mr-eyes
closed
5 years ago
0
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