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idba doesn't necessary produce scaffolds #127

Closed SherineAwad closed 10 years ago

SherineAwad commented 10 years ago

idba assembler sometimes doesn't generate scaffolds while calc-best-assembly command captures scaffolds. If we update it to capture contigs it might be more general and avoid getting 'file doesn't exist' for missing scaffolds.

SherineAwad commented 10 years ago

Fixed

ctb commented 10 years ago

what was the fix?

On Mon, Aug 11, 2014 at 11:12:32AM -0700, Sherine Mahmoud wrote:

Fixed

Reply to this email directly or view it on GitHub:

https://github.com/ged-lab/khmer-protocols/issues/127#issuecomment-51818181

C. Titus Brown, ctb@msu.edu