Open ctb opened 9 years ago
Yes, that URL is stable. I'll file a bug for the adapters to be included in future packages.
%%
inside a shell parameter specification causes the trimming from the end of the parameter value of what follows the %%
. Just another way to swap out filename extensions; mostly equivalent to your use of basename.
Docs at http://www.gnu.org/software/bash/manual/bash.html#Shell-Parameter-Expansion
I'm very surprised to hear that you think using a subdirectory for each stage of processing will confuse people. I find dozens of files whose names differ by just a few characters in one big directory to be confusing.
Trimmomatic bug is filed: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=779296
On Thu, Feb 26, 2015 at 09:54:21AM -0800, Michael R. Crusoe wrote:
I'm very surprised to hear that you think using a subdirectory for each stage of processing will confuse people. I find dozens of files whose names differ by just a few characters in one big directory to be confusing.
Paths/directorys are #1 confusion for people new to the shell, we find.