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3-big-assembly.txt contains a newline that breaks scan (acceptance) #159

Closed bocajnotnef closed 9 years ago

bocajnotnef commented 9 years ago

https://github.com/ged-lab/khmer-protocols/blob/acceptance/mrnaseq/3-big-assembly.txt#L34

The newline stops scan from completing the section and the remaining lines don't get copied into the .sh file; trinity is never installed and the test breaks.

This issue also looks to be present in master: https://github.com/ged-lab/khmer-protocols/blob/master/mrnaseq/3-big-assembly.txt#L32

Fix: delete the blank line.

bocajnotnef commented 9 years ago

Fixed in #160