Closed bocajnotnef closed 9 years ago
https://github.com/ged-lab/khmer-protocols/blob/acceptance/mrnaseq/3-big-assembly.txt#L34
The newline stops scan from completing the section and the remaining lines don't get copied into the .sh file; trinity is never installed and the test breaks.
This issue also looks to be present in master: https://github.com/ged-lab/khmer-protocols/blob/master/mrnaseq/3-big-assembly.txt#L32
Fix: delete the blank line.
Fixed in #160
https://github.com/ged-lab/khmer-protocols/blob/acceptance/mrnaseq/3-big-assembly.txt#L34
The newline stops scan from completing the section and the remaining lines don't get copied into the .sh file; trinity is never installed and the test breaks.
This issue also looks to be present in master: https://github.com/ged-lab/khmer-protocols/blob/master/mrnaseq/3-big-assembly.txt#L32
Fix: delete the blank line.